Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30218
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 30 1.6
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_16125| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9) 30 2.1
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 29 3.6
SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5) 29 3.6
SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7) 29 4.8
SB_43947| Best HMM Match : efhand (HMM E-Value=2e-11) 28 6.4
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_9019| Best HMM Match : Kelch_1 (HMM E-Value=2.89999e-41) 28 8.4
SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 8.4
>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 139
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 152 NNWNSNQAWSVPNIFGGVALQPLSQMFKATQPPQPETCAVAKSAVANKQL 301
+ +N N+ WS+P I G + QP S +P P+T + +KQL
Sbjct: 56 HGYNVNR-WSLPPILGCIPKQPDSSKAHRERPRSPQTGLSPSTTCCSKQL 104
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 479 RSRECRSRHCKPSESNPPTETKPEQPAAGPLKQIFENSPV 598
R+ S H P S PPT TK P+ G Q +PV
Sbjct: 1006 RAASSSSNHSTPVNSAPPTPTKNATPSKGTPGQSTSGTPV 1045
>SB_16125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 470 QYDRSRECRSRHCKPSESNPPTETKPEQPA 559
QY R CR +HC + TET P+Q A
Sbjct: 5 QYRSRRGCREKHCGHVAKSRGTETDPQQRA 34
>SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)
Length = 297
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +1
Query: 199 RSSTAAPQSDVQGDATTTTRDLRRGKICRRK*ATFLIPRDKTVTNKTRAVNSRRRLLVS 375
R ST+ ++ V TTR R + +R+ AT + R + VT + RAV RRR +VS
Sbjct: 31 RRSTSRRRAVVSRRRVVTTR---RRVVTQRRRAT--VRRRRVVTTRRRAVTRRRRAIVS 84
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 556 RSRAIKTNFREQPSSARHRRSSLKKIQTTVNNPVKPR 666
R +KT ++Q +AR RR+SLK + + +PR
Sbjct: 1090 RQAILKTKLQDQDQAARPRRASLKTSKAQDKHAARPR 1126
>SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 156
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 176 WSVPNIFGGVALQPLSQMFKATQPPQPETCAVAKSAVANKQL 301
WS+P I G + QP S +P P+T + +KQL
Sbjct: 80 WSLPPILGCIPKQPDSSKAHRERPRSPQTGLSPSTTCCSKQL 121
>SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 176 WSVPNIFGGVALQPLSQMFKATQPPQPETCAVAKSAVANKQL 301
WS+P I G + QP S +P P+T + +KQL
Sbjct: 36 WSLPPILGCIPKQPDSSKAHRKRPRSPQTGFSPSTTCCSKQL 77
>SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)
Length = 187
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 176 WSVPNIFGGVALQPLSQMFKATQPPQPETCAVAKSAVANKQL 301
WS+P I G + QP S +P P+T + +KQL
Sbjct: 111 WSLPPILGCIPKQPDSSKAHRERPRSPQTGFSPSTTCCSKQL 152
>SB_43947| Best HMM Match : efhand (HMM E-Value=2e-11)
Length = 482
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 65 NGPTNPLIQMVTNLQNSFLSGMANLTQAINNW 160
+GP +PL+ + S +SGM N+T +W
Sbjct: 133 SGPASPLVSNMPTSSASPVSGMKNITSDTQSW 164
>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2492
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 429 RPGAQSTEKPAEATSTTGVASAAPDIANH 515
RPGA KP + TST+ +S I+NH
Sbjct: 778 RPGAPWPGKPGDETSTSSGSSVLAAISNH 806
>SB_9019| Best HMM Match : Kelch_1 (HMM E-Value=2.89999e-41)
Length = 151
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 582 KICFNGPAAGCSGFVSVGGFDSDGLQCLERHSRLRSYWSL 463
K C +G +A C ++GG D Q +ER + WSL
Sbjct: 4 KRCRHGLSASCGFIYAIGGKDECFHQSVERFDPKTNTWSL 43
>SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 587
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 582 KICFNGPAAGCSGFVSVGGFDSDGLQCLERHSRLRSYWSL 463
K C +G +A C ++GG D Q +ER + WSL
Sbjct: 314 KRCRHGLSASCGFIYAIGGKDECFHQSVERFDPKTNTWSL 353
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,225,376
Number of Sequences: 59808
Number of extensions: 480092
Number of successful extensions: 1401
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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