Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30218
         (701 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC027910-1|AAH27910.1|  703|Homo sapiens Usher syndrome 1C bindi...    31   3.0  
AK096028-1|BAC04680.1|  383|Homo sapiens protein ( Homo sapiens ...    31   3.0  
AB040046-1|BAB43978.1|   68|Homo sapiens MCC2-68 protein.              31   3.0  
AB026290-1|BAB41203.1|  703|Homo sapiens AIEBP protein.                31   3.0  
AL121919-1|CAI21544.2| 1677|Homo sapiens chromosome 20 open read...    31   5.3  

>BC027910-1|AAH27910.1|  703|Homo sapiens Usher syndrome 1C binding
           protein 1 protein.
          Length = 703

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 479 RSRECRSRHCKPSESNPPTETKPE-QPAAGPLKQIFENSPVLQGI 610
           R R  R RH  P E +P  E+  E + A+G  K  F   PV  G+
Sbjct: 7   RPRSRRGRHAPPGELDPVAESSEEVEAASGSSKPSFAPPPVSSGL 51


>AK096028-1|BAC04680.1|  383|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38709 fis, clone KIDNE2002883. ).
          Length = 383

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 479 RSRECRSRHCKPSESNPPTETKPE-QPAAGPLKQIFENSPVLQGI 610
           R R  R RH  P E +P  E+  E + A+G  K  F   PV  G+
Sbjct: 7   RPRSRRGRHAPPGELDPVAESSEEVEAASGSSKPSFAPPPVSSGL 51


>AB040046-1|BAB43978.1|   68|Homo sapiens MCC2-68 protein.
          Length = 68

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 479 RSRECRSRHCKPSESNPPTETKPE-QPAAGPLKQIFENSPVLQGI 610
           R R  R RH  P E +P  E+  E + A+G  K  F   PV  G+
Sbjct: 7   RPRSRRGRHAPPGELDPVAESSEEVEAASGSSKPSFAPPPVSSGL 51


>AB026290-1|BAB41203.1|  703|Homo sapiens AIEBP protein.
          Length = 703

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 479 RSRECRSRHCKPSESNPPTETKPE-QPAAGPLKQIFENSPVLQGI 610
           R R  R RH  P E +P  E+  E + A+G  K  F   PV  G+
Sbjct: 7   RPRSRRGRHAPPGELDPVAESSEEVEAASGSSKPSFAPPPVSSGL 51


>AL121919-1|CAI21544.2| 1677|Homo sapiens chromosome 20 open reading
           frame 174 protein.
          Length = 1677

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +3

Query: 390 NFPFNFLNLLQPNRPGAQSTEKPAEATSTTGVASAAP 500
           N PF    +LQP  PG     KPA  T T  +    P
Sbjct: 86  NVPFILSPVLQPEGPGPTQVGKPAAPTLTVNIVGTLP 122


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,121,103
Number of Sequences: 237096
Number of extensions: 2416644
Number of successful extensions: 6816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6813
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)