Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30218
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    29   2.4  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    29   3.2  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    28   7.4  
AF039720-11|AAK68359.1|  260|Caenorhabditis elegans Hypothetical...    28   7.4  
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical
           protein B0379.7 protein.
          Length = 409

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 485 RECRS-RHCKPSESNPPTETKPEQPAAGPLKQIFENSP 595
           R  RS R  K S S+P T    EQPAA P +Q+ + +P
Sbjct: 32  RSSRSTRSTKSSRSSPKTVPVTEQPAAAPPQQLEQPTP 69


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 79  ICRAIGACYCRSCCALSRGGTG 14
           IC  IG C   SCC L  GG G
Sbjct: 338 ICTFIGVCCVISCCVLRTGGGG 359


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 470 QYDRSREC-RSRHCKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAG 616
           ++  S+EC R     P E  PP E  P+ P   P +   + SP   G  G
Sbjct: 199 EHQESQECPRGEPLIPGEPGPPGEAGPQGPPGSPGQPGADGSPGQPGPKG 248


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 467 DQYDRSRECRSRHCKPSESNPPTETKP 547
           D Y+ S +    H  P    PPT+T P
Sbjct: 265 DDYESSEDISESHTTPPTQTPPTQTPP 291


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 364 GACDC*PLWFCWLLFCPWGLKKLLICDGRFCHGAG 260
           G C C P W      CP      L  +G+ C+G G
Sbjct: 587 GKCICAPGWTGRACECPISTDSCLSANGKICNGKG 621


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 364 GACDC*PLWFCWLLFCPWGLKKLLICDGRFCHGAG 260
           G C C P W      CP      L  +G+ C+G G
Sbjct: 587 GKCICAPGWTGRACECPISTDSCLSANGKICNGKG 621


>AF039720-11|AAK68359.1|  260|Caenorhabditis elegans Hypothetical
           protein F33D11.12 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 207 HCSPSVRCSRRRNHHNQRPAPWQN 278
           HCS   RC RR +HH     PW N
Sbjct: 99  HCSVCERCIRRMDHH----CPWVN 118


>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
           protein T13F2.3b protein.
          Length = 1076

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 503 HCKPSESNPPTETKPEQPAAGPLKQIFENSPVL 601
           H  P + NP     PEQP   P  Q ++ +P +
Sbjct: 38  HQVPQQQNPSGFVMPEQPRQQPPPQTWQRTPTM 70


>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
           protein T13F2.3a protein.
          Length = 1074

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 503 HCKPSESNPPTETKPEQPAAGPLKQIFENSPVL 601
           H  P + NP     PEQP   P  Q ++ +P +
Sbjct: 38  HQVPQQQNPSGFVMPEQPRQQPPPQTWQRTPTM 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,821
Number of Sequences: 27780
Number of extensions: 358322
Number of successful extensions: 1142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)