Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30218
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.7  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   4.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   8.6  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/56 (17%), Positives = 24/56 (42%)
 Frame = +1

Query: 1   CS*KFQYRPCSKHNSFYSNKHQWPYKSFNSNGDQPPEFILVRNG*SHSSNQQLELE 168
           C  K  Y       + +  K+QW Y  +N   D+  +  +     ++ +N  ++++
Sbjct: 16  CQAKAHYSLRDFKANIFQVKYQWKYFDYNFGSDEKRQAAIQSGEYNYKNNVPIDVD 71


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 503 HCKPSESNPPTETKPEQPAA 562
           H  P E + P ET+P  P+A
Sbjct: 284 HPDPGEVDLPPETQPTPPSA 303


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 576 CFNGPAAGCSGFVSVGGFDSDGLQC 502
           C  GP   C G  +  G  ++G+QC
Sbjct: 61  CAKGPDELCGGPQNYLGICAEGMQC 85


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 10 KFQYRPCSKH 39
          K QYRPC+K+
Sbjct: 49 KIQYRPCTKN 58


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 10  KFQYRPCSKH 39
           K QYRPC+K+
Sbjct: 98  KIQYRPCTKN 107


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 199 RSSTAAPQSDVQGDATTTTRDLRRGKI 279
           +  TA    +V GD   T   L+ GKI
Sbjct: 821 KGDTATLHCEVHGDTPVTVTWLKGGKI 847


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 199 RSSTAAPQSDVQGDATTTTRDLRRGKI 279
           +  TA    +V GD   T   L+ GKI
Sbjct: 817 KGDTATLHCEVHGDTPVTVTWLKGGKI 843


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 64  QWPYKSFNSNGDQPPEFILVRNG 132
           QW       N DQP ++ L+ NG
Sbjct: 434 QWLKNDEALNHDQPDKYDLIGNG 456


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 67  WPYKSFNSNGDQPPEF 114
           WP+K +  NG+    F
Sbjct: 151 WPFKEYQMNGNNITNF 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,330
Number of Sequences: 438
Number of extensions: 4442
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)