Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30218
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g48160.1 68415.m06031 PWWP domain-containing protein 31 0.98
At2g43530.1 68415.m05408 trypsin inhibitor, putative similar to ... 30 1.3
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 29 3.0
At1g80070.1 68414.m09373 splicing factor, putative strong simila... 28 5.2
At1g15160.1 68414.m01812 MATE efflux family protein Strong simil... 28 5.2
At3g24560.3 68416.m03086 expressed protein contains Pfam profil... 28 6.9
At3g24560.2 68416.m03084 expressed protein contains Pfam profil... 28 6.9
At3g24560.1 68416.m03085 expressed protein contains Pfam profil... 28 6.9
At5g39080.1 68418.m04728 transferase family protein similar to a... 27 9.1
At1g80450.1 68414.m09421 VQ motif-containing protein contains PF... 27 9.1
At1g71140.1 68414.m08209 MATE efflux family protein similar to r... 27 9.1
At1g15000.1 68414.m01792 serine carboxypeptidase S10 family prot... 27 9.1
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +1
Query: 13 FQYRPCSKHNSFYSNKHQWPYKSFNSNG---DQPP 108
++Y P S + S Y ++H+ PY S + NG D PP
Sbjct: 1298 WRYPPSSSYGSRYQDEHKAPYPSSSYNGVRWDNPP 1332
>At2g43530.1 68415.m05408 trypsin inhibitor, putative similar to
SP|P26780 Trypsin inhibitor 2 precursor (MTI-2) {Sinapis
alba}
Length = 85
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 696 LVSFKPTSEISWLHWIIDCCLDFF*TAPAMPCRTGLFSKICFNGPAAGCSGFVSVGGFDS 517
L+ F TSEIS + CL + AP C ++ +C+ C + G
Sbjct: 15 LILFLVTSEISEIEAKDKECLKGYIDAPLSYCMARIYPSLCYR----NCRFYKGAKGGKC 70
Query: 516 DGLQC 502
DGL+C
Sbjct: 71 DGLKC 75
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Frame = -2
Query: 424 GCKRFRKLNGKFCTPEKR--PEGACDC*PLWFCWLLFCPWGLKKLLICDGRFCHGAGXXX 251
GC R+ F P+K+ P C+C P W C L C KK
Sbjct: 640 GCVFRRQALYGFDAPKKKQPPGRTCNCWPKWCC--LCCGMRKKKTGKVKDNQRKKPKETS 697
Query: 250 XXXXXLEHLTEGLQCYSAKN 191
LEH+ EGLQ +A+N
Sbjct: 698 KQIHALEHIEEGLQVTNAEN 717
>At1g80070.1 68414.m09373 splicing factor, putative strong
similarity to splicing factor Prp8 [Homo sapiens]
GI:3661610; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 2382
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2
Query: 232 EHLTEGLQCYSAKNIWNTPCLVRVPVVDCLSEISHSGQE*ILEVGHHLN*RICRAIGACY 53
+HL+E +C+ A W P L VP+ + + S + V H+ RI R GA
Sbjct: 757 QHLSEAWRCWKANIPWKVPGL-PVPIENMILRYVKSKADWWTNVAHYNRERIRR--GATV 813
Query: 52 CRSCCALSRG 23
++ C + G
Sbjct: 814 DKTVCRKNLG 823
>At1g15160.1 68414.m01812 MATE efflux family protein Strong
similarity to gi|4734005 F3L12.7 hypothetical protein
from Arabidopsis thaliana BAC gb|AC007178; similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 487
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 173 AWSVPNIFGGVALQPLSQMFK 235
AW +P +F LQPL++ FK
Sbjct: 156 AWLIPGLFAYAVLQPLTRYFK 176
>At3g24560.3 68416.m03086 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 456
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 612 AMPCRTGLFSKICFNGPAAGCSG 544
A+PCRT L + C+ PA G G
Sbjct: 185 AIPCRTSLTAAGCYLSPAPGSKG 207
>At3g24560.2 68416.m03084 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 660
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 612 AMPCRTGLFSKICFNGPAAGCSG 544
A+PCRT L + C+ PA G G
Sbjct: 389 AIPCRTSLTAAGCYLSPAPGSKG 411
>At3g24560.1 68416.m03085 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 462
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 612 AMPCRTGLFSKICFNGPAAGCSG 544
A+PCRT L + C+ PA G G
Sbjct: 191 AIPCRTSLTAAGCYLSPAPGSKG 213
>At5g39080.1 68418.m04728 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 463
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/41 (21%), Positives = 20/41 (48%)
Frame = +2
Query: 107 QNSFLSGMANLTQAINNWNSNQAWSVPNIFGGVALQPLSQM 229
+ L+ ++ +I W+ + AW +P+ L P +Q+
Sbjct: 352 EEGLLAAATMVSDSIEEWDESFAWKIPDFVAYATLPPETQL 392
>At1g80450.1 68414.m09421 VQ motif-containing protein contains
PF05678: VQ motif
Length = 177
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 586 EQPSSARH-RRSSLKKIQTTVNNPVKPRDF*SGFER 690
++P+ H RR S KK++ VNN P D S F R
Sbjct: 59 KKPAFKLHERRQSSKKMELKVNNITNPNDAFSHFHR 94
>At1g71140.1 68414.m08209 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 485
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 176 WSVPNIFGGVALQPLSQMFKA 238
W +P +FG LQPL + F+A
Sbjct: 152 WLIPALFGYATLQPLVRFFQA 172
>At1g15000.1 68414.m01792 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase precursor (SP:P32826)
[Arabidopsis thaliana]; similar to GB:AAD42963 from
[Matricaria chamomilla]
Length = 444
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 65 NGPTNPLIQMVTNLQNSFLSGMANLTQAI 151
NG T+P+ Q+ T+ N + SG+ N Q +
Sbjct: 201 NGLTDPVTQVQTHAVNVYYSGLVNAKQRV 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,418
Number of Sequences: 28952
Number of extensions: 329781
Number of successful extensions: 1043
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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