Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30216
(659 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 161 2e-38
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 108 1e-22
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 91 3e-17
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 80 5e-14
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 76 9e-13
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 72 1e-11
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 71 2e-11
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 70 6e-11
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 69 1e-10
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 68 2e-10
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 66 7e-10
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 65 1e-09
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 65 2e-09
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 64 2e-09
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 64 3e-09
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 61 3e-08
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 60 5e-08
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 60 5e-08
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 59 1e-07
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 56 8e-07
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 55 2e-06
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 55 2e-06
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 52 9e-06
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 49 9e-05
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 48 2e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 6e-04
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.001
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 45 0.002
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 45 0.002
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 43 0.008
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 42 0.010
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.010
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.013
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 42 0.017
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 42 0.017
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.023
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 41 0.023
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 41 0.030
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 41 0.030
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.040
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 40 0.040
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.040
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 40 0.040
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.040
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.053
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 40 0.070
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.093
UniRef50_Q39G63 Cluster: Putative monooxygenase, FAD-binding; n=... 39 0.12
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 38 0.16
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 38 0.16
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.16
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 38 0.16
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.21
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 38 0.21
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 38 0.28
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 38 0.28
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 37 0.37
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 37 0.37
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 37 0.37
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 37 0.49
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 37 0.49
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 37 0.49
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.65
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 0.65
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.86
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 36 1.1
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 36 1.1
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 35 1.5
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 35 2.0
UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein pr... 35 2.0
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.6
UniRef50_P26866 Cluster: Mitochondrial ribosomal protein S4; n=3... 34 2.6
UniRef50_A2ZWP2 Cluster: Putative uncharacterized protein; n=1; ... 34 3.5
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 34 3.5
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 33 4.6
UniRef50_Q5VWP3 Cluster: Uncharacterized protein C6orf142; n=15;... 33 6.1
UniRef50_Q2J4C0 Cluster: Glycosyl transferase, family 51; n=3; F... 33 8.0
UniRef50_A7M543 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
UniRef50_Q0UYK5 Cluster: Predicted protein; n=1; Phaeosphaeria n... 33 8.0
UniRef50_A6QZA5 Cluster: Predicted protein; n=1; Ajellomyces cap... 33 8.0
UniRef50_A2R3M8 Cluster: Catalytic activity: polyketide synthase... 33 8.0
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 33 8.0
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 161 bits (390), Expect = 2e-38
Identities = 78/85 (91%), Positives = 82/85 (96%)
Frame = +2
Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 433
P+RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 434 ILIRQRHICVRKQVVNIPSFIVRLD 508
+LIRQRHI VRKQVVNIPSFIVRLD
Sbjct: 128 VLIRQRHIRVRKQVVNIPSFIVRLD 152
Score = 120 bits (288), Expect = 4e-26
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +3
Query: 75 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 254
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 255 PR 260
PR
Sbjct: 68 PR 69
Score = 63.7 bits (148), Expect = 4e-09
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +1
Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 603
KHIDFSL+SP+GGGRPGRVKRKN +KGQGG
Sbjct: 155 KHIDFSLRSPYGGGRPGRVKRKNAKKGQGG 184
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 108 bits (260), Expect = 1e-22
Identities = 53/85 (62%), Positives = 67/85 (78%)
Frame = +2
Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 433
PKRL EG ALLRRL +G+L Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR
Sbjct: 67 PKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHAR 126
Query: 434 ILIRQRHICVRKQVVNIPSFIVRLD 508
+LIR + I V KQVV++PSF+VR++
Sbjct: 127 VLIRGKMIKVGKQVVDVPSFLVRVE 151
Score = 68.1 bits (159), Expect = 2e-10
Identities = 28/60 (46%), Positives = 43/60 (71%)
Frame = +3
Query: 81 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPR 260
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDP+
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 90.6 bits (215), Expect = 3e-17
Identities = 43/70 (61%), Positives = 52/70 (74%)
Frame = +2
Query: 248 EGPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 427
+ P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH
Sbjct: 56 KNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHH 115
Query: 428 ARILIRQRHI 457
+LIRQ HI
Sbjct: 116 DHVLIRQHHI 125
Score = 64.5 bits (150), Expect = 2e-09
Identities = 33/61 (54%), Positives = 42/61 (68%)
Frame = +3
Query: 78 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 257
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 258 R 260
R
Sbjct: 59 R 59
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 79.8 bits (188), Expect = 5e-14
Identities = 43/87 (49%), Positives = 62/87 (71%), Gaps = 8/87 (9%)
Frame = +2
Query: 272 GNALLRRLVRIGVL------DEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 427
G +LLRRL++ G+L D++++ L+ VL L I +LERRLQ +VF AGLAKS+HH
Sbjct: 70 GRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHH 129
Query: 428 ARILIRQRHICVRKQVVNIPSFIVRLD 508
AR+LI R I ++ Q+V++P F+VR D
Sbjct: 130 ARLLIGGRCISIKDQIVDVPGFMVRAD 156
Score = 56.0 bits (129), Expect = 8e-07
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +3
Query: 81 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 239
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT 59
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 75.8 bits (178), Expect = 9e-13
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +3
Query: 69 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 242
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLAL 61
Score = 53.6 bits (123), Expect = 4e-06
Identities = 30/82 (36%), Positives = 47/82 (57%)
Frame = +2
Query: 281 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIC 460
L+ + R G+L +D VL LK+ LERRLQT V++ GLA+S AR L+ HI
Sbjct: 78 LISHMQRAGLLGP-DADIDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIA 136
Query: 461 VRKQVVNIPSFIVRLDLASTLT 526
+ + V +P ++V +T++
Sbjct: 137 IGGRRVTVPGYLVTRGEETTIS 158
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 71.7 bits (168), Expect = 1e-11
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +3
Query: 69 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 245
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQ 62
Score = 56.4 bits (130), Expect = 6e-07
Identities = 32/73 (43%), Positives = 43/73 (58%)
Frame = +2
Query: 281 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIC 460
L+ L R G+L E +D VL LK+E L+RRLQTQV++ G A+S AR I HI
Sbjct: 78 LIGSLQRSGMLSENA-DIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIA 136
Query: 461 VRKQVVNIPSFIV 499
+ + V IP + V
Sbjct: 137 IGGRRVTIPGYTV 149
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 71.3 bits (167), Expect = 2e-11
Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 6/91 (6%)
Frame = +2
Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMK------LDYVLGLKIEDFLERRLQTQVFKAGLAK 415
P+ LFE N LLR+LV G+L E +MK + GL+I F E++LQTQVF+ L K
Sbjct: 68 PRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQVFELVLDK 126
Query: 416 SIHHARILIRQRHICVRKQVVNIPSFIVRLD 508
SI HA +L+ HI + KQVV+I F V LD
Sbjct: 127 SIRHACVLLCHCHIRIGKQVVDIAFFFVGLD 157
Score = 41.9 bits (94), Expect = 0.013
Identities = 21/29 (72%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +3
Query: 177 EVWRVKYTLARIRKAARE-LLTLEEKDPR 260
EVWRVK+TL +IRKA E LL L EKDPR
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPR 69
Score = 41.1 bits (92), Expect = 0.023
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1
Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 603
KH DF GGG PG VKRKN++KG+GG
Sbjct: 160 KHTDFFRHCLNGGGYPGSVKRKNVKKGRGG 189
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 69.7 bits (163), Expect = 6e-11
Identities = 33/79 (41%), Positives = 51/79 (64%)
Frame = +2
Query: 290 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRK 469
+L ++G +++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V
Sbjct: 78 KLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAG 137
Query: 470 QVVNIPSFIVRLDLASTLT 526
+ V P F+V +L ++
Sbjct: 138 RRVTSPGFLVPRELEDKIS 156
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +3
Query: 99 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPRDCSK 272
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEMPF 75
Query: 273 VMPFYVVWFV 302
Y + F+
Sbjct: 76 KEKLYKMGFI 85
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 68.9 bits (161), Expect = 1e-10
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = +2
Query: 281 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIC 460
L+++L R+G++++ LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI
Sbjct: 73 LIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIA 132
Query: 461 VRKQVVNIPSFIV 499
+ + V P +IV
Sbjct: 133 IGGRRVTSPGYIV 145
Score = 50.0 bits (114), Expect = 5e-05
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 69 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-- 242
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 243 EEKDPRDCSKVMPFY 287
E+ R+ + Y
Sbjct: 64 AERSTREKQLIQKLY 78
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 67.7 bits (158), Expect = 2e-10
Identities = 33/81 (40%), Positives = 56/81 (69%)
Frame = -2
Query: 505 QAHNK*WDVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLNLQTKHIIEFH 326
Q+ ++ WDV +LL ++N+ L DQ+S +++ L Q L LQ++ QE+ NLQ++ II+
Sbjct: 42 QSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEIFNLQSQDIIQLL 101
Query: 325 LFFIQYSNTNQTT*KGITFEQ 263
L F Q +N++Q++ + ITFEQ
Sbjct: 102 LVFRQDTNSHQSSDQSITFEQ 122
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 66.1 bits (154), Expect = 7e-10
Identities = 32/90 (35%), Positives = 56/90 (62%)
Frame = +3
Query: 78 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 257
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 258 RDCSKVMPFYVVWFVLEYWMKNR*NSIMCL 347
+ S+ + ++WF +Y N N CL
Sbjct: 70 KIPSQ--SYGILWFCYKYNFMN--NMTFCL 95
Score = 61.3 bits (142), Expect = 2e-08
Identities = 29/59 (49%), Positives = 41/59 (69%)
Frame = +2
Query: 332 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRLD 508
L+ ++ + + L RRLQT V + L+K+IH ARILI +HI V+ Q+VN PSF+VR D
Sbjct: 95 LESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKD 153
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 65.3 bits (152), Expect = 1e-09
Identities = 36/80 (45%), Positives = 48/80 (60%)
Frame = +2
Query: 269 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 448
E L L + G+L + LD VL L +ED LERRLQT VF+ GLA++ AR LI
Sbjct: 70 EAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVH 129
Query: 449 RHICVRKQVVNIPSFIVRLD 508
HI V +VV PS++V ++
Sbjct: 130 GHIAVNGRVVTAPSYMVTVE 149
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +3
Query: 78 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 239
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 64.9 bits (151), Expect = 2e-09
Identities = 35/78 (44%), Positives = 50/78 (64%)
Frame = +2
Query: 269 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 448
E L +L ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I
Sbjct: 68 EKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVH 126
Query: 449 RHICVRKQVVNIPSFIVR 502
HI V +VV+ PS++V+
Sbjct: 127 GHIMVNGEVVDAPSYLVK 144
Score = 44.0 bits (99), Expect = 0.003
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +3
Query: 99 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPRDCSK 272
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ +D S+
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISE 67
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 64.5 bits (150), Expect = 2e-09
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +3
Query: 69 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 233
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYL 58
Score = 60.9 bits (141), Expect = 3e-08
Identities = 39/109 (35%), Positives = 55/109 (50%)
Frame = +2
Query: 281 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIC 460
+++RL R +L +K LD VL L +E+ L+RRLQT VFK LA S AR LI HI
Sbjct: 76 MIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHIT 134
Query: 461 VRKQVVNIPSFIVRLDLASTLTSL*NLHSVEVVLDVSRGRTSARDRVAE 607
V + V +P +V T+ N + + + S +RV E
Sbjct: 135 VNGRRVTVPGMLVEAQYEDTIAYYENSPIANELHPIRQALLSPAERVKE 183
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 64.1 bits (149), Expect = 3e-09
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = +2
Query: 272 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 451
G + RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++ AR +
Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHG 125
Query: 452 HICVRKQVVNIPSFIVRLDLASTL 523
H+ V V PS+ V + +TL
Sbjct: 126 HVTVDGSRVTEPSYTVPVSEENTL 149
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +3
Query: 66 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 236
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 60.9 bits (141), Expect = 3e-08
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = +2
Query: 293 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQ 472
L R G+L ++ LD VL L +E LERRLQT VF+ GLA + AR I HI V +
Sbjct: 77 LNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGK 136
Query: 473 VVNIPSFIVRL 505
+N PS++V L
Sbjct: 137 KINAPSYLVPL 147
Score = 54.4 bits (125), Expect = 2e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +3
Query: 69 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 239
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS 60
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 60.1 bits (139), Expect = 5e-08
Identities = 28/73 (38%), Positives = 47/73 (64%)
Frame = +2
Query: 281 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIC 460
++++L +G+L E KL+ VL LK++D +ERRLQT +++ G A SI AR I HI
Sbjct: 80 IVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHIS 138
Query: 461 VRKQVVNIPSFIV 499
+ + + +P ++V
Sbjct: 139 LNGRKITVPGYLV 151
Score = 57.6 bits (133), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +3
Query: 69 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 236
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 60.1 bits (139), Expect = 5e-08
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +2
Query: 269 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 448
+ +L +L+R G++ + +D +L LK E+ LERRLQTQV + GLA+++ AR I
Sbjct: 78 QSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITH 136
Query: 449 RHICVRKQVVNIPSFIV 499
HI + + IP +V
Sbjct: 137 GHIAINGRKATIPGMLV 153
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +3
Query: 69 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 236
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 58.8 bits (136), Expect = 1e-07
Identities = 33/73 (45%), Positives = 46/73 (63%)
Frame = +2
Query: 281 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIC 460
++ R+V+ G+L E L+ VL + FLERRLQT VFK GLA++I AR LI I
Sbjct: 71 IIARMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIA 129
Query: 461 VRKQVVNIPSFIV 499
V + V+IP ++V
Sbjct: 130 VNMKRVSIPGYMV 142
Score = 40.3 bits (90), Expect = 0.040
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 84 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 239
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLS 60
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 56.0 bits (129), Expect = 8e-07
Identities = 30/73 (41%), Positives = 42/73 (57%)
Frame = +2
Query: 281 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIC 460
LL LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI
Sbjct: 73 LLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHIT 131
Query: 461 VRKQVVNIPSFIV 499
+ + +N P +V
Sbjct: 132 LNGKKINAPGHLV 144
Score = 50.8 bits (116), Expect = 3e-05
Identities = 22/70 (31%), Positives = 42/70 (60%)
Frame = +3
Query: 84 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPRD 263
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++ + D
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDERAD 68
Query: 264 CSKVMPFYVV 293
K + ++V
Sbjct: 69 KEKELLDHLV 78
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 54.8 bits (126), Expect = 2e-06
Identities = 24/27 (88%), Positives = 27/27 (100%)
Frame = +3
Query: 180 VWRVKYTLARIRKAARELLTLEEKDPR 260
VWRVK+TLA+IRKAARELLTL+EKDPR
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPR 27
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 54.8 bits (126), Expect = 2e-06
Identities = 37/109 (33%), Positives = 54/109 (49%)
Frame = +2
Query: 281 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIC 460
LLR L RIG++ K LD VL L++ D L RRLQT V K + + AR + HI
Sbjct: 73 LLRSLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHIT 131
Query: 461 VRKQVVNIPSFIVRLDLASTLTSL*NLHSVEVVLDVSRGRTSARDRVAE 607
+ +VV IPS+ V ++ + ++ R +AR+ AE
Sbjct: 132 ISDRVVTIPSYTVYVEEEGDIKLTGGSAFATILEKSKRAEAAAREAAAE 180
Score = 52.0 bits (119), Expect = 1e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +3
Query: 69 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 248
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 249 K 251
+
Sbjct: 64 E 64
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 314 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 421
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 52.4 bits (120), Expect = 9e-06
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +2
Query: 308 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIP 487
+ +E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI
Sbjct: 67 IYEEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIA 125
Query: 488 SFIVRL-DLASTLTSL*NLHSVEVVLD 565
SF V++ D+ S + + N+ +++ ++
Sbjct: 126 SFRVKVGDIVSVIENSKNVELIKLAVE 152
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 49.2 bits (112), Expect = 9e-05
Identities = 27/48 (56%), Positives = 30/48 (62%)
Frame = -3
Query: 507 SRRTINDGMFTTCLRTQICLCRIKILA*WMDFARPALNTCVCRRRSKK 364
S RT G FT CL T+I RIK A D ARP+L T VC+RRSKK
Sbjct: 71 SVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSVCKRRSKK 118
Score = 34.7 bits (76), Expect = 2.0
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -1
Query: 188 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 84
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 344 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRL-DLAST 520
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+ D+ S
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQNGDMISI 182
Query: 521 LTSL*NL 541
+ NL
Sbjct: 183 KPEIVNL 189
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 78 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 236
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 341 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSF 493
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 45.2 bits (102), Expect = 0.001
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +2
Query: 320 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIV 499
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 500 R 502
+
Sbjct: 113 K 113
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 341 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIV 499
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ V
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSYQV 140
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/60 (40%), Positives = 36/60 (60%)
Frame = +2
Query: 347 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRLDLASTLT 526
G + LERRL VF+AG A ++ AR L+ RH+ + + VNIPS +RL++ +T
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 42.7 bits (96), Expect = 0.008
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +2
Query: 347 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIV 499
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV 139
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 42.3 bits (95), Expect = 0.010
Identities = 24/61 (39%), Positives = 33/61 (54%)
Frame = +2
Query: 320 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIV 499
K K+ G + FLE RL VF+ +A +I AR LI HI V + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 500 R 502
+
Sbjct: 152 K 152
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.010
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +2
Query: 317 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSF 493
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.9 bits (94), Expect = 0.013
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 347 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSF 493
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 41.5 bits (93), Expect = 0.017
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 347 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRLDLASTL- 523
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ +L
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKVGQEISLR 143
Query: 524 TSL*NLHSVEVVLD 565
NL V+ LD
Sbjct: 144 DKSKNLQQVKDALD 157
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 41.5 bits (93), Expect = 0.017
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 341 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIV 499
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV 134
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.023
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +2
Query: 317 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFI 496
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 497 VRL 505
VR+
Sbjct: 135 VRV 137
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 41.1 bits (92), Expect = 0.023
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +2
Query: 311 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPS 490
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V+IPS
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPS 94
Query: 491 F 493
+
Sbjct: 95 Y 95
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.7 bits (91), Expect = 0.030
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +2
Query: 341 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVR 502
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 40.7 bits (91), Expect = 0.030
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 368 LERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSF 493
LE RL V++ G A SI AR ++ H V + VNIPSF
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF 127
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 40.3 bits (90), Expect = 0.040
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 347 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSF 493
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 40.3 bits (90), Expect = 0.040
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = +1
Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 606
KHI FSL SP GG RVKRKN + GGG
Sbjct: 45 KHIAFSLTSPLGGSPAVRVKRKNQKASGGGG 75
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 40.3 bits (90), Expect = 0.040
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 329 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFI 496
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 40.3 bits (90), Expect = 0.040
Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = +1
Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 609
K D SL SP GGGRPGRVK+K+L+ K GGA
Sbjct: 34 KRGDSSLTSPLGGGRPGRVKKKSLKVAAKEAAGGA 68
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 40.3 bits (90), Expect = 0.040
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 362 DFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRL 505
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.053
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +2
Query: 320 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIV 499
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 500 R 502
+
Sbjct: 130 K 130
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 39.5 bits (88), Expect = 0.070
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +2
Query: 311 LDEKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQV 475
L E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +
Sbjct: 59 LKENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSIL 118
Query: 476 VNIPSFIV 499
V PSFI+
Sbjct: 119 VKKPSFIL 126
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 39.1 bits (87), Expect = 0.093
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +2
Query: 347 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSF 493
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q39G63 Cluster: Putative monooxygenase, FAD-binding; n=1;
Burkholderia sp. 383|Rep: Putative monooxygenase,
FAD-binding - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 374
Score = 38.7 bits (86), Expect = 0.12
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +3
Query: 18 LSASSACELAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKII--GEYGLRNKREVWRV 191
LS S L ++ + R+P+VFS+ + R PF +A D G L
Sbjct: 252 LSNDSVASLRQLASERLPAVFSQLVLATRAPFVQAIFDALSPHFAHGRVALVGDAACTVR 311
Query: 192 KYTLARIRKAARELLTLEEKDPRDCSKVMPFYVVWFV 302
+T + KAAR+ ++L E P D + V+ W +
Sbjct: 312 PHTASGTSKAARDAVSLAESLPADATDVVARLARWSI 348
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 38.3 bits (85), Expect = 0.16
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +1
Query: 508 PGKHIDFSLKSPFGGGRPGRVKRKNLR 588
P K IDFS GGGRPGRVKRK L+
Sbjct: 156 PQKLIDFSNTCLLGGGRPGRVKRKGLK 182
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 38.3 bits (85), Expect = 0.16
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 347 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSF 493
GL + LE RL VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 38.3 bits (85), Expect = 0.16
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 317 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFI 496
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 497 V 499
V
Sbjct: 136 V 136
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 38.3 bits (85), Expect = 0.16
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +2
Query: 347 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVR 502
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF V+
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSFRVK 140
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.21
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +2
Query: 368 LERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVR 502
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.9 bits (84), Expect = 0.21
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 341 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVR 502
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 37.5 bits (83), Expect = 0.28
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +2
Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 433
P R LL +L +G++ K L+ + F RRL + + +++++ HA
Sbjct: 69 PFRTEMSGLLLEKLYVLGLIPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKHAT 127
Query: 434 ILIRQRHICVRKQVVNIPSFIVRLDLASTLT 526
+I H+ V VV P+F+V L +T
Sbjct: 128 QMIEHGHVRVGTDVVKDPAFLVPRTLEDFVT 158
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.5 bits (83), Expect = 0.28
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 368 LERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVR 502
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 37.1 bits (82), Expect = 0.37
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Frame = +2
Query: 266 FEGNALLRRLVRIGVLDEK--QMKLDY--VLGLK--IEDFLERRLQTQVFKAGLAKSIHH 427
F N L RL R L+ K Q KL Y G + I LE+R+ + ++G +S++
Sbjct: 104 FTQNLTLHRLFRKFYLNLKLKQFKLLYKKYKGNEKVIIQQLEKRVDMVLLRSGFVRSLYE 163
Query: 428 ARILIRQRHICVRKQVVNIPSFIVRL 505
AR +I +H+ V ++ ++P +++ +
Sbjct: 164 ARQIINHKHLLVNGKIASLPGYMINV 189
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 37.1 bits (82), Expect = 0.37
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +2
Query: 287 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVR 466
R+LVR V K++K G + LE RL VF+ +A +I AR LI HI +
Sbjct: 85 RQLVRY-VQQAKKIKGS--TGRVLLRLLEMRLDNIVFRLHMAPTIKAARQLISHGHILIN 141
Query: 467 KQVVNIPSF 493
K+ V IPS+
Sbjct: 142 KKKVTIPSY 150
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 37.1 bits (82), Expect = 0.37
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +2
Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 433
P R LL +L +GVL K D + + RRL + + +A++I A
Sbjct: 69 PFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAV 128
Query: 434 ILIRQRHICVRKQVVNIPSFIVRLDLASTLT 526
I Q H+ V ++N P+++V ++ +T
Sbjct: 129 KFIEQGHVRVGPNLINDPAYLVTRNMEDYVT 159
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 36.7 bits (81), Expect = 0.49
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 482 CSQLACGHKYAFAGSKFWHDGWTSPGQL*TPASAD 378
CS L H+ +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 36.7 bits (81), Expect = 0.49
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 347 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVR 502
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 36.7 bits (81), Expect = 0.49
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 329 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRL 505
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISL 140
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 0.65
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +2
Query: 368 LERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIV 499
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 36.3 bits (80), Expect = 0.65
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 362 DFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRLDLASTL 523
+ LE+RL VF+ G A SI AR L+ + V + VNI S I+++ TL
Sbjct: 91 NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQIIKVGDKITL 144
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 35.9 bits (79), Expect = 0.86
Identities = 23/83 (27%), Positives = 40/83 (48%)
Frame = +2
Query: 278 ALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 457
ALL +L +G++ + L+ + F RRL T + K +A+ + A + Q H+
Sbjct: 78 ALLDKLYALGLVPTRG-SLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHV 136
Query: 458 CVRKQVVNIPSFIVRLDLASTLT 526
V VV P+F+V + +T
Sbjct: 137 RVGPDVVTDPAFLVTRSMEDFVT 159
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 35.5 bits (78), Expect = 1.1
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +2
Query: 290 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRK 469
RL +GV+ + L + + DF RRL V + + A LI+Q HI V
Sbjct: 81 RLYDLGVIILPEKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGP 140
Query: 470 QVVNIPSFIV 499
V+ P++IV
Sbjct: 141 DVIRNPAYIV 150
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 35.5 bits (78), Expect = 1.1
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 347 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSF 493
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 35.1 bits (77), Expect = 1.5
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 368 LERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRL-DLASTLTSL*NLH 544
+E+RL ++++G K+I AR R I V +V IPS I+ D+ S L +L
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTILESGDIISYKNQLDSLK 259
Query: 545 SVEV 556
+ E+
Sbjct: 260 TAEI 263
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 34.7 bits (76), Expect = 2.0
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +2
Query: 281 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIC 460
+L++L +G++ KQ L + F RRL + K +A+++ A ++ HI
Sbjct: 34 MLKKLYNMGIVPTKQ-NLALCDNVSASSFCRRRLPVVMVKIKMAETVESAVKFVQHGHIR 92
Query: 461 VRKQVVNIPSFIV 499
V ++V P+F+V
Sbjct: 93 VGPELVLDPAFLV 105
>UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3, putative; n=6; Trypanosomatidae|Rep: U3
small nucleolar ribonucleoprotein protein IMP3, putative
- Trypanosoma brucei
Length = 226
Score = 34.7 bits (76), Expect = 2.0
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +2
Query: 281 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIC 460
+L +L +G+++EK + L V + +E F +RRL T + +A + A + H+
Sbjct: 124 ILDKLYAMGLINEK-LGLAEVDKVGVEVFCKRRLPTVLRDLNMAPNCKIAADFVHHGHVR 182
Query: 461 VRKQVVNIPSFIVRLDLASTLT 526
V + P+F+V DL +T
Sbjct: 183 VGTSQIRDPAFLVPRDLEDYVT 204
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 34.3 bits (75), Expect = 2.6
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +1
Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 609
KH DFSL SP G R +VKRK L+ K GGA
Sbjct: 5 KHGDFSLTSPLGSSRLEKVKRKGLKVAAKKAAGGA 39
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 2.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 409 GEVHPSCQNFDPAKAYLCPQASCEHPIIYCAP 504
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_P26866 Cluster: Mitochondrial ribosomal protein S4; n=3;
Streptophytina|Rep: Mitochondrial ribosomal protein S4 -
Marchantia polymorpha (Liverwort)
Length = 196
Score = 34.3 bits (75), Expect = 2.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 368 LERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIV 499
+E+RL + + ++ AR LI ++ICV + VNIP F V
Sbjct: 86 IEKRLDVILVRLNFCSTMFQARQLISHKNICVNYKKVNIPGFQV 129
>UniRef50_A2ZWP2 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 640
Score = 33.9 bits (74), Expect = 3.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 541 PFGGGRPGRVKRKNLRKGQGGGAPMMKRKINK 636
P GG + R +R+ R GQGGGAP +R + +
Sbjct: 188 PRGGAQARRARRRGGRVGQGGGAPERRRALQR 219
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 33.9 bits (74), Expect = 3.5
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +2
Query: 365 FLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRLDLASTLTSL*NLH 544
F RRL T + + + + A I Q HI V VVNIP++ V +L +T
Sbjct: 116 FCRRRLATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWAQGSK 175
Query: 545 SVEVVLDVSRGR 580
E V+D + R
Sbjct: 176 IKEKVVDFTGAR 187
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 33.5 bits (73), Expect = 4.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 147 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 257
I +YGLR++ E + + ++RK A L L+E DP
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDP 68
>UniRef50_Q5VWP3 Cluster: Uncharacterized protein C6orf142; n=15;
Catarrhini|Rep: Uncharacterized protein C6orf142 - Homo
sapiens (Human)
Length = 458
Score = 33.1 bits (72), Expect = 6.1
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 376 SSADAGVQSWPGEVHPSCQN--FDPAKAYLCPQASCEHPIIYCAPGPGKHIDFSL 534
S D V P +HP Q + PAK+ L PQ + APGP H+ FSL
Sbjct: 369 SEQDVTVPPKPVSLHPLYQTKLYPPAKSLLHPQTLSHADCL--APGPFSHLSFSL 421
>UniRef50_Q2J4C0 Cluster: Glycosyl transferase, family 51; n=3;
Frankia|Rep: Glycosyl transferase, family 51 - Frankia
sp. (strain CcI3)
Length = 1065
Score = 32.7 bits (71), Expect = 8.0
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 505 GPGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGAPMMKRK 627
GPG+ + P G G PGR K R GQG PM R+
Sbjct: 323 GPGRSSRAEMGVPGGAGGPGRRNGKAPRPGQGRHGPMWWRR 363
>UniRef50_A7M543 Cluster: Putative uncharacterized protein; n=1;
Bacteroides ovatus ATCC 8483|Rep: Putative
uncharacterized protein - Bacteroides ovatus ATCC 8483
Length = 918
Score = 32.7 bits (71), Expect = 8.0
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 168 NKREVWRVKYTLARIRKAARELLTLEEKDPR 260
+KR + K+T++R+R+ EL++ EE+DPR
Sbjct: 673 DKRVKYYSKFTISRLREGRPELISYEEQDPR 703
>UniRef50_Q0UYK5 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 222
Score = 32.7 bits (71), Expect = 8.0
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 129 DQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPR-DCSKVMPFYVVW 296
D+ELK + G + E WRV+ + + + RE+L + + R + +V+P +W
Sbjct: 111 DEELKTVRLEGEMDATEFWRVQAVVEELERVLREMLNRDVRAGRSEFEEVLPKRKIW 167
>UniRef50_A6QZA5 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 482
Score = 32.7 bits (71), Expect = 8.0
Identities = 24/74 (32%), Positives = 29/74 (39%)
Frame = +2
Query: 233 PHPRGEGPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 412
PH G P GN L L + + +LD DFL RR KA LA
Sbjct: 349 PHVNGNAPPTAVTGNGLSDELDSLSSFSDNDSELDDETSSSGSDFLRRR------KATLA 402
Query: 413 KSIHHARILIRQRH 454
S AR+ R+ H
Sbjct: 403 SSEPRARLHPRREH 416
>UniRef50_A2R3M8 Cluster: Catalytic activity: polyketide synthases
are multifunctional enzymes; n=1; Aspergillus niger|Rep:
Catalytic activity: polyketide synthases are
multifunctional enzymes - Aspergillus niger
Length = 1869
Score = 32.7 bits (71), Expect = 8.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 502 PGPGKHIDFS---LKSPFGGGRPGRVKRKNLRKGQGGGAPMMKR 624
P PG HI+FS + SP G RP + G+G A ++KR
Sbjct: 837 PSPGLHIEFSRIRVASPDGRSRPFSADAAGMGLGEGASAVVLKR 880
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 32.7 bits (71), Expect = 8.0
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 114 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPRDCSKVM 278
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D + ++
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQLNAIL 669
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,567,065
Number of Sequences: 1657284
Number of extensions: 14284106
Number of successful extensions: 41618
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 40053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41599
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -