Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30216
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.1  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   9.0  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 188 RQIHARSYP*GCS*APHPRGEGPKRLFE----GNALLRRLVRIGVLDEKQ 325
           RQ+H + YP   S A   RG+  KR  +    GN++ +   R G+  + Q
Sbjct: 536 RQLHMQLYPDWSSRANATRGKKRKRKQDPADGGNSMKKCRARYGLDQQNQ 585


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 188 RQIHARSYP*GCS*APHPRGEGPKRLFE----GNALLRRLVRIGVLDEKQ 325
           RQ+H + YP   S A   RG+  KR  +    GN++ +   R G+  + Q
Sbjct: 428 RQLHMQLYPDWSSRANATRGKKRKRKQDPADGGNSMKKCRARYGLDQQNQ 477


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 367 LGASSADAGVQSWPGEVHPSCQNF 438
           L    A  GV+ +   VH  C NF
Sbjct: 289 LSGLKAPPGVEHFEDVVHKKCSNF 312


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 457 LCPQASCEHPIIYC 498
           L P  S  +PIIYC
Sbjct: 295 LAPLNSAANPIIYC 308


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 388 AGVQSWPGEVHPSCQNFDPAKAYLCPQAS 474
           AG+ SWP E      + +    + CP+ +
Sbjct: 148 AGICSWPDEAKKKGCSSEEVFQFECPKVN 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,950
Number of Sequences: 336
Number of extensions: 3466
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)