Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30216
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   149   3e-37
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   149   4e-37
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    42   1e-04
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    29   0.78 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    28   1.0  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    28   1.4  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    27   1.8  
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    27   1.8  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   3.2  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   4.2  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    25   9.7  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.7  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  149 bits (362), Expect = 3e-37
 Identities = 69/85 (81%), Positives = 79/85 (92%)
 Frame = +2

Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 433
           PKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 67  PKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHAR 126

Query: 434 ILIRQRHICVRKQVVNIPSFIVRLD 508
           +LI QRHI V KQ+VN+PSF+VRLD
Sbjct: 127 VLIFQRHIRVGKQIVNVPSFVVRLD 151



 Score =  101 bits (243), Expect = 7e-23
 Identities = 46/64 (71%), Positives = 53/64 (82%)
 Frame = +3

Query: 69  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 248
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 249 KDPR 260
           KDP+
Sbjct: 65  KDPK 68



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +1

Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 606
           KHIDF+L SP+GGGRPGR KRK LR  Q GG
Sbjct: 154 KHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 184


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  149 bits (361), Expect = 4e-37
 Identities = 69/85 (81%), Positives = 79/85 (92%)
 Frame = +2

Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 433
           PKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 67  PKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHAR 126

Query: 434 ILIRQRHICVRKQVVNIPSFIVRLD 508
           +LI QRHI V KQ+VN+PSF+VRLD
Sbjct: 127 VLIFQRHIRVGKQIVNVPSFVVRLD 151



 Score =  101 bits (243), Expect = 7e-23
 Identities = 46/64 (71%), Positives = 53/64 (82%)
 Frame = +3

Query: 69  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 248
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 249 KDPR 260
           KDP+
Sbjct: 65  KDPK 68



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +1

Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 603
           KHIDF+L SP+GGGRPGR KRK LR  +GG
Sbjct: 154 KHIDFALSSPYGGGRPGRCKRKRLRSQEGG 183


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 26/91 (28%), Positives = 41/91 (45%)
 Frame = +2

Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 433
           P RL   N LL +L  +G+L  K    D      +     RRL   + K  +++ +  A 
Sbjct: 69  PFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEAT 128

Query: 434 ILIRQRHICVRKQVVNIPSFIVRLDLASTLT 526
            LI Q H+ V   V+  P+++V   L   +T
Sbjct: 129 RLIEQGHVRVGPHVITDPAYLVTRSLEDFVT 159


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +2

Query: 290 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI--RQRHICV 463
           ++ ++ V++E +++      + +ED L+  L+  +   GLA+ I  A   +  RQ H+CV
Sbjct: 7   QIEQVDVVEEVEVEAAAPETVSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCV 66


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/44 (40%), Positives = 19/44 (43%)
 Frame = +1

Query: 355  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYLCPQASCEHP 486
            D GLLGA+S   GVQS PG   P      P      P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 580 SSS*HVQDDLHRMEISERSQCACQVQAHNK*WDVHN 473
           SS+ H  D +H   + + S C C+  AH   +  H+
Sbjct: 215 SSARHSSDSVHEYLVKKPSNCDCECHAHFSSFPTHS 250


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 374 RRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRLDLASTLTSL*NLHSVE 553
           R L       G+ ++I+ +++L     + +RK   N+P ++  LD    +T L  L   E
Sbjct: 110 RGLDCWYLVVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQE 169

Query: 554 VVLDVSRGRTSAR 592
            +L    G  S R
Sbjct: 170 DLLSSRDGEASLR 182


>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 350 LKIEDFLERRLQTQVFKAGLAKSIHHARILI--RQRHICV 463
           L +ED L+  L+  +   GLA+ I  A   +  RQ H+CV
Sbjct: 30  LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCV 69


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 326 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 457
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 413 KSIHHARILIRQRHICVRKQVVNIPSFIVRLDLASTLTSL*NLHSVEV 556
           +S+ H R L   +H+ +     N P+ I +L + + + SL  L+ V +
Sbjct: 306 RSLDHLRTLENLKHLRITLSYFNKPTDIAKLLVIARIPSLVKLNDVNI 353


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 525 LLSEISIRWRSSWTCQEEEPPQGTGWR 605
           +L ++S  W+ +W  +E++      WR
Sbjct: 390 ILGDLSEEWKDAWRWREDDKASELKWR 416


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 42  LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 200
           ++K VN      FS +    +R  + A +D   + + E   RN++   +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,107
Number of Sequences: 5004
Number of extensions: 55738
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)