Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30216
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 126 2e-29
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 126 2e-29
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 126 2e-29
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 91 9e-19
07_03_1358 - 25984897-25984997,25985623-25985650 47 2e-05
07_03_1357 - 25982861-25983068,25983354-25983361 40 0.001
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 31 0.61
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 31 0.81
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 31 1.1
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 31 1.1
07_03_0366 + 17321948-17322331 30 1.9
08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931 29 3.3
05_05_0313 - 24026142-24026708 29 3.3
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 29 4.3
12_01_0993 - 10069179-10070057,10070708-10071049 28 5.7
03_06_0069 - 31449319-31450368 28 5.7
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 28 7.6
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 126 bits (304), Expect = 2e-29
Identities = 59/87 (67%), Positives = 74/87 (85%)
Frame = +2
Query: 248 EGPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 427
+ P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHH
Sbjct: 67 KNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHH 126
Query: 428 ARILIRQRHICVRKQVVNIPSFIVRLD 508
AR+LIRQRHI V +Q+VNIPSF+VR++
Sbjct: 127 ARVLIRQRHIRVGRQIVNIPSFMVRVE 153
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/61 (67%), Positives = 51/61 (83%)
Frame = +3
Query: 78 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 257
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 258 R 260
R
Sbjct: 70 R 70
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = +1
Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 606
KHIDFSL SPFGGG PGRVKRKN +K GGG
Sbjct: 156 KHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 186
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 126 bits (304), Expect = 2e-29
Identities = 59/87 (67%), Positives = 74/87 (85%)
Frame = +2
Query: 248 EGPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 427
+ P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHH
Sbjct: 90 KNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHH 149
Query: 428 ARILIRQRHICVRKQVVNIPSFIVRLD 508
AR+LIRQRHI V +Q+VNIPSF+VR++
Sbjct: 150 ARVLIRQRHIRVGRQIVNIPSFMVRVE 176
Score = 93.1 bits (221), Expect = 2e-19
Identities = 41/59 (69%), Positives = 50/59 (84%)
Frame = +3
Query: 84 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPR 260
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+PR
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPR 93
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = +1
Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 606
KHIDFSL SPFGGG PGRVKRKN +K GGG
Sbjct: 179 KHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 209
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 126 bits (304), Expect = 2e-29
Identities = 59/87 (67%), Positives = 74/87 (85%)
Frame = +2
Query: 248 EGPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 427
+ P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHH
Sbjct: 283 KNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHH 342
Query: 428 ARILIRQRHICVRKQVVNIPSFIVRLD 508
AR+LIRQRHI V +Q+VNIPSF+VR++
Sbjct: 343 ARVLIRQRHIRVGRQIVNIPSFMVRVE 369
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/61 (67%), Positives = 51/61 (83%)
Frame = +3
Query: 78 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 257
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 258 R 260
R
Sbjct: 286 R 286
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = +1
Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 606
KHIDFSL SPFGGG PGRVKRKN +K GGG
Sbjct: 372 KHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 402
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 90.6 bits (215), Expect = 9e-19
Identities = 43/70 (61%), Positives = 52/70 (74%)
Frame = +2
Query: 248 EGPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 427
+ P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH
Sbjct: 56 KNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHH 115
Query: 428 ARILIRQRHI 457
+LIRQ HI
Sbjct: 116 DHVLIRQHHI 125
Score = 64.5 bits (150), Expect = 7e-11
Identities = 33/61 (54%), Positives = 42/61 (68%)
Frame = +3
Query: 78 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 257
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 258 R 260
R
Sbjct: 59 R 59
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 78 FSKTYVTPRRPFEKARLDQELKIIGEYG 161
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = +1
Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 606
KHI FSL SP GG RVKRKN + GGG
Sbjct: 22 KHIAFSLTSPLGGSPAVRVKRKNQKASGGGG 52
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/27 (59%), Positives = 21/27 (77%), Gaps = 4/27 (14%)
Frame = +2
Query: 461 VRKQVVNIPSFIVRLD----LASTLTS 529
V +Q+VNIPSFIVRL+ +A +LTS
Sbjct: 4 VGRQLVNIPSFIVRLESEKHIAFSLTS 30
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 547 GGGRPGRVKRKNLRKGQGGGAPMMK 621
G RPG RKN +GQGGG + K
Sbjct: 1369 GSSRPGEWNRKNNNRGQGGGREVWK 1393
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 31.1 bits (67), Expect = 0.81
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +1
Query: 409 GEVHPSCQNFDPAKAYLCPQASCEHPIIYCAPGPGKHIDFSLKSPFGGGRP--GRVKRK- 579
G P P+ A P+ + P + P P KHI +L GGG+P G + +
Sbjct: 80 GGASPLPAGVSPSPARSTPRRFFKRP--FPPPSPAKHIKATLAKRLGGGKPKEGTIPEEG 137
Query: 580 NLRKGQGGG 606
+ G GGG
Sbjct: 138 GVGAGGGGG 146
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 356 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRLDL-ASTLTSL 532
+ED+ E L T F A L KS+H AR H+ +++ P+ +L ASTL L
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRARDSQLVLHLALQRHHHEPPAAASASELYASTLGEL 169
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 374 RRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIVRLDLASTLT 526
RRL T + K A+ + A I+Q H+ V + V P+F+V ++ +T
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLVTRNMEDFIT 132
>07_03_0366 + 17321948-17322331
Length = 127
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 505 GPGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGA 609
G G ++ +S GGG R +R+ R+G GGGA
Sbjct: 30 GIGDTVEAERQSRHGGGGRRRRQRRGRRRGSGGGA 64
>08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931
Length = 461
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 105 DEVSRTSLKIP-TVLCCSPSWRARTHCSPIRIRKEV 1
DE S T+ K+ V CSP RA+ C +++ KEV
Sbjct: 264 DEKSGTACKVEYQVEECSPENRAKNECIDVKVTKEV 299
>05_05_0313 - 24026142-24026708
Length = 188
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 550 GGRPGRVKRKNLRKGQGGGAPMMKRKINKTINIYN 654
GG GR+ RK +G GGG +R+I K + I N
Sbjct: 22 GGGAGRMHRKGKHQGDGGGGGGKRREI-KVVYIAN 55
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 132 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPRD--CSK--VMPFYVVW 296
Q L+ I G+ + +E++ + +L RIR R LT+E D + C +MP + W
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLDALNTVCPTIGIMPSGIPW 270
>12_01_0993 - 10069179-10070057,10070708-10071049
Length = 406
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +1
Query: 547 GGGRPGRVKRKNL-RKGQGGGAPMMKRKINKTINIYN 654
GGG G + N R G GG +IN I IYN
Sbjct: 252 GGGGGGSTRAANASRSGGNGGGGACNEEINSAIAIYN 288
>03_06_0069 - 31449319-31450368
Length = 349
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -1
Query: 428 HDGWTSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYE 297
HD +S G L P+SA +P + SDQ H VS+ P Y+
Sbjct: 237 HDVLSSLG-LKLPSSASSSPAASYYSDQLHAVVSNAGRPQAPYD 279
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 373 ASSADAGVQSWPGEVHPSCQNFDPAKAY 456
A+S G SW CQ++DPAK Y
Sbjct: 394 AASLVKGNLSWRSREFLDCQSYDPAKVY 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,531,950
Number of Sequences: 37544
Number of extensions: 423309
Number of successful extensions: 1300
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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