Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30216
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             156   1e-38
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               29   4.4  
SB_44630| Best HMM Match : HECT (HMM E-Value=0)                        28   5.9  
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   7.7  
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 28   7.7  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  156 bits (379), Expect = 1e-38
 Identities = 74/85 (87%), Positives = 81/85 (95%)
 Frame = +2

Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 433
           P+RLFEGNALLRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 65  PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124

Query: 434 ILIRQRHICVRKQVVNIPSFIVRLD 508
           +LIRQRHI VRKQ+VN+PSF+VRLD
Sbjct: 125 VLIRQRHIRVRKQLVNVPSFVVRLD 149



 Score =  118 bits (283), Expect = 6e-27
 Identities = 56/62 (90%), Positives = 58/62 (93%)
 Frame = +3

Query: 75  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 254
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 255 PR 260
           PR
Sbjct: 65  PR 66



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 26/30 (86%), Positives = 29/30 (96%)
 Frame = +1

Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 603
           KHIDFSL SP+GGGRPGRVKRKN++KGQGG
Sbjct: 152 KHIDFSLNSPYGGGRPGRVKRKNMKKGQGG 181


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 102 RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPRDCSKVMP 281
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   P+  S V+ 
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPKFDSPVLE 116

Query: 282 F 284
           +
Sbjct: 117 Y 117


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 22/91 (24%), Positives = 42/91 (46%)
 Frame = +2

Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 433
           P R+     +L +L  +G++  K+  L     +    F  RRL   +    +A+ +  A 
Sbjct: 69  PYRVEATEQILEKLHNMGLISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAV 127

Query: 434 ILIRQRHICVRKQVVNIPSFIVRLDLASTLT 526
             I Q H+ V  +V+  P+F+V  ++   +T
Sbjct: 128 KYIEQGHVRVGPEVIMDPAFLVAKNMEDFVT 158


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 117 KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPRDCSKVMPF 284
           K  L Q+   +G+YG   KR+   V         AARE+L +E   P+  S V+ +
Sbjct: 2   KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPKFDSPVLEY 57


>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1003

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -2

Query: 193 LTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYVFENTDGTLLFTILASSHALLADKN 14
           LTRH+S+   R   P I  S S       RR  +    N+      T+ AS+ A L+D N
Sbjct: 40  LTRHSSQPKLRRDEPSITGSLSNLTLDNSRRAASLAQLNSLKATGKTLSASNLAALSDTN 99


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 482 CSQLACGHKYAFAGSKFWHDGWTSP 408
           C++LA    Y++ G +FW + W+ P
Sbjct: 72  CARLAEQKNYSYFGVQFWGECWSGP 96


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 293 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 439
           L++I   D+K M+ +Y+LGL +E   +R    +++   + K   H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,922,744
Number of Sequences: 59808
Number of extensions: 449140
Number of successful extensions: 1179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)