Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30216
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   155   3e-38
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    31   0.96 
AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rna...    29   2.2  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF332212-1|AAK17983.1|  231|Caenorhabditis elegans nuclear recep...    27   8.9  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    27   8.9  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   8.9  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  155 bits (375), Expect = 3e-38
 Identities = 74/85 (87%), Positives = 81/85 (95%)
 Frame = +2

Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 433
           PKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 67  PKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHAR 126

Query: 434 ILIRQRHICVRKQVVNIPSFIVRLD 508
           ILI+Q HI VR+QVV++PSFIVRLD
Sbjct: 127 ILIKQHHIRVRRQVVDVPSFIVRLD 151



 Score =  108 bits (259), Expect = 4e-24
 Identities = 49/66 (74%), Positives = 59/66 (89%)
 Frame = +3

Query: 63  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 242
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 243 EEKDPR 260
           E+KDP+
Sbjct: 63  EDKDPK 68



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 25/31 (80%), Positives = 28/31 (90%)
 Frame = +1

Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 606
           KHIDFSL+SP+GGGRPGRVKR+ LRKG G G
Sbjct: 154 KHIDFSLQSPYGGGRPGRVKRRTLRKGDGAG 184


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 365 FLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFIV 499
           F  RRL   +   G+ +S+  A  L+ Q H+ +  ++V  P+F+V
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMV 149


>AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 1, isoform b protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/97 (23%), Positives = 39/97 (40%)
 Frame = +2

Query: 317 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHICVRKQVVNIPSFI 496
           EK    +Y+   + EDF +   +  +FK G  KS   AR +I    + V  +  +  +  
Sbjct: 427 EKMAIREYLENKQTEDFAKIAAERGIFKIGEIKSYQTARPIIEDDDVDVESEEEDYGTEF 486

Query: 497 VRLDLASTLTSL*NLHSVEVVLDVSRGRTSARDRVAE 607
             L++   +  + +    EV LD    R    D   E
Sbjct: 487 EMLEVVERMPPVSSTLHTEVDLDAVWERDGGSDSERE 523


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 97  VTYVFENTDGTLLFTILASSH 35
           + YVF+N+D  LLF IL   H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180


>AF332212-1|AAK17983.1|  231|Caenorhabditis elegans nuclear receptor
           NHR-98 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 516 LARSRRTINDGMFTTCLRTQICLCRIKIL 430
           LAR R+   D M  TC+   + +C ++ L
Sbjct: 186 LARKRKLCKDDMVMTCVNKNVLICDLRTL 214


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 482 CSQLACGHKYAFAGSKFWHDG 420
           C +  CG ++ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 516 LARSRRTINDGMFTTCLRTQICLCRIKIL 430
           LAR R+   D M  TC+   + +C ++ L
Sbjct: 266 LARKRKLCKDDMVMTCVNKNVLICDLRTL 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,151,467
Number of Sequences: 27780
Number of extensions: 334202
Number of successful extensions: 1014
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)