Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30216
(659 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 134 5e-32
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 131 5e-31
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 38 0.008
At1g55250.1 68414.m06310 expressed protein weak similarity to PU... 30 1.6
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa... 29 3.6
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 3.6
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 4.8
At5g41310.1 68418.m05020 kinesin motor protein-related 28 4.8
At4g13500.1 68417.m02106 expressed protein 28 4.8
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 28 4.8
At1g43730.1 68414.m05028 hypothetical protein 28 4.8
At1g02020.2 68414.m00122 nitroreductase family protein contains ... 28 4.8
At1g02020.1 68414.m00121 nitroreductase family protein contains ... 28 4.8
At3g62100.1 68416.m06977 auxin-responsive protein, putative simi... 28 6.3
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 8.4
At5g28615.1 68418.m03493 hypothetical protein 27 8.4
At5g03320.1 68418.m00283 protein kinase, putative similar to ser... 27 8.4
At2g05310.1 68415.m00559 expressed protein 27 8.4
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 134 bits (324), Expect = 5e-32
Identities = 63/87 (72%), Positives = 76/87 (87%)
Frame = +2
Query: 248 EGPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 427
+ P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH
Sbjct: 67 KSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126
Query: 428 ARILIRQRHICVRKQVVNIPSFIVRLD 508
+R+LIRQRHI V KQ+VNIPSF+VRLD
Sbjct: 127 SRVLIRQRHIRVGKQLVNIPSFMVRLD 153
Score = 101 bits (241), Expect = 6e-22
Identities = 43/61 (70%), Positives = 54/61 (88%)
Frame = +3
Query: 78 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 257
+ KT+ PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69
Query: 258 R 260
R
Sbjct: 70 R 70
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/35 (68%), Positives = 27/35 (77%), Gaps = 4/35 (11%)
Frame = +1
Query: 514 KHIDFSLKSPFGGGRPGRVKRKN----LRKGQGGG 606
KHIDF+L SPFGGGRPGRVKR+N +K GGG
Sbjct: 156 KHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGG 190
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 131 bits (316), Expect = 5e-31
Identities = 61/87 (70%), Positives = 76/87 (87%)
Frame = +2
Query: 248 EGPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 427
+ P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH
Sbjct: 67 KNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126
Query: 428 ARILIRQRHICVRKQVVNIPSFIVRLD 508
AR+LIRQRHI V +Q+VNIPSF+VR++
Sbjct: 127 ARVLIRQRHIRVGRQLVNIPSFMVRVE 153
Score = 104 bits (249), Expect = 6e-23
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +3
Query: 51 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 230
MVN R + KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60
Query: 231 LLTLEEKDPR 260
LLTL+EK+PR
Sbjct: 61 LLTLDEKNPR 70
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +1
Query: 514 KHIDFSLKSPFGGGRPGRVKRKNLRKG 594
KH+DFSL SPFGGGRPGRVKR+N R G
Sbjct: 156 KHVDFSLTSPFGGGRPGRVKRRNERAG 182
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +2
Query: 254 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 433
P R+ + LL +L +GV+ ++ L L + F RRL T + A+ A
Sbjct: 68 PFRIQMTDMLLEKLYNMGVIPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAV 126
Query: 434 ILIRQRHICVRKQVVNIPSFIVRLDLASTLT 526
I Q H+ V + + P+F+V ++ +T
Sbjct: 127 TYIEQGHVRVGPETITDPAFLVTRNMEDFIT 157
>At1g55250.1 68414.m06310 expressed protein weak similarity to PUMA1
[Parascaris univalens] GI:3068590
Length = 522
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -3
Query: 645 IYCLINLPLHHWRSATLSLAEVLPLDTSRTTSTEWRFQREVNVLARSRRTINDGMFTTCL 466
+Y LIN +HHW +A L ++L S R +E+N+ A S N T
Sbjct: 379 LYSLINDRIHHW-NAELDRYKILTEAIQAERSFVMRRDKELNLRAESLEAANHKTTTVGS 437
Query: 465 RTQI 454
R ++
Sbjct: 438 RIEV 441
>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +2
Query: 5 SFLILIGEQCVRARQDGEQQSTVGIFKDVRDTSSSF*KGTS*PRVEDHRRV 157
SF++L C+R++ G ++T + D+ ++ G P +E + R+
Sbjct: 28 SFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRI 78
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 84 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 200
K ++ PRR P + Q E K EYG RN E W + T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 322 TDETRLCAWSED*GLLGASSADAGVQSW 405
T E CAWS LL + S DA + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 384 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHHLL 497
RRR S A S + F G F+ AS++ TSHH L
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHHSL 178
>At4g13500.1 68417.m02106 expressed protein
Length = 125
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 484 PIIYCAPGPGKHIDFSLKSPFGGGRPGRVKRKNLRK 591
P +C P P +F L + GGG G VK K+ +K
Sbjct: 34 PQFFCPPSPLGFPEFKLHAKLGGG-DGEVKPKDKKK 68
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/81 (22%), Positives = 31/81 (38%)
Frame = +1
Query: 370 GASSADAGVQSWPGEVHPSCQNFDPAKAYLCPQASCEHPIIYCAPGPGKHIDFSLKSPFG 549
GA + G G+ S + + ++CP SC + + + G + +
Sbjct: 111 GAEETNGGAGRGRGQADSSAKPWQQDGDWMCPNTSCTN-VNFAFRGVCNRCGTARPAGAS 169
Query: 550 GGRPGRVKRKNLRKGQGGGAP 612
GG G + + G GGAP
Sbjct: 170 GGSMGAGRGRGRGGGADGGAP 190
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 440 SKFWHDGWTSPGQL 399
+KFWHD WT G L
Sbjct: 77 AKFWHDNWTGHGPL 90
>At1g02020.2 68414.m00122 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 543
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 391 GVQSWPGEVHPSCQNFDPAKAYL 459
G +WP V+PS N P +AYL
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAYL 186
>At1g02020.1 68414.m00121 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 642
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 391 GVQSWPGEVHPSCQNFDPAKAYL 459
G +WP V+PS N P +AYL
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAYL 186
>At3g62100.1 68416.m06977 auxin-responsive protein, putative similar
to SP|O24410 Auxin-responsive protein IAA20
(Indoleacetic acid-induced protein 20) {Arabidopsis
thaliana}; contains Pfam profile: PF02309: AUX/IAA
family
Length = 172
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 219 AARELLTLEEKDPRDCSKVMPFYV 290
AA E++ +EE++ +C+ V FYV
Sbjct: 62 AAEEMMIMEEEEQNECNSVGSFYV 85
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 290 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 391
RL + VLDE++ +D LG+K ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506
>At5g28615.1 68418.m03493 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 440 SKFWHDGWTSPGQL 399
+KFWHD WT G L
Sbjct: 9 AKFWHDDWTGLGPL 22
>At5g03320.1 68418.m00283 protein kinase, putative similar to
serine/threonine-protein kinase NAK [Arabidopsis
thaliana] SWISS-PROT:P43293
Length = 420
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 196 YLTRHTSRLLRRPYSPMIFNSWSRRA--FSKGRRGVTYVFENTDGTLLFTILASSHALLA 23
Y+ + P SP + +W R RG+TY+ E D ++F SS+ LL
Sbjct: 166 YMPNQSVEFHLSPRSPTVL-TWDLRLRIAQDAARGLTYLHEEMDFQIIFRDFKSSNILL- 223
Query: 22 DKN 14
D+N
Sbjct: 224 DEN 226
>At2g05310.1 68415.m00559 expressed protein
Length = 125
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 484 PIIYCAPGPGKHIDFSLKSPFGGGRPGRVKRKNLRK 591
P +C P P F L + GGG G VK K+ +K
Sbjct: 34 PQFFCPPSPLGFPQFKLHAKLGGG-DGEVKPKDKKK 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,356,477
Number of Sequences: 28952
Number of extensions: 313484
Number of successful extensions: 939
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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