Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30215
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    36   0.008
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    28   1.5  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   2.0  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.5  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   8.1  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    25   8.1  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +2

Query: 224  HNQFRSNLF*HNRPSGSINIQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPS 403
            H+  R+N   H+ P  +   Q+  +N   L  G  +P +  +F +PQ SP  N V+ +PS
Sbjct: 876  HSLSRANSPVHHYPFATPPSQR--ANKYPLNNGANVPALLNSFSSPQLSPLVNRVLNEPS 933

Query: 404  IQTYNQETTKIVPQKSG 454
                +  + K    K G
Sbjct: 934  SSPLSSSSLKSPLSKEG 950


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 579 PGNMVVSPFSIHDIIGLFFNKGATGF 656
           PG++V SP  + +++ + FNKG   F
Sbjct: 784 PGHLVDSPNILREVLSMTFNKGDNNF 809


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +2

Query: 281  IQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTP 460
            ++  L   N L I  K+P   P+     Y P A +  +  S  T  ++  K  P  +  P
Sbjct: 873  VETVLEKFNDLKIENKVPETAPDVVPSSYPPAAES-NVSVSSDTSTKDVEKQEPSSAEQP 931

Query: 461  AKKMTDTFFKRK 496
            A+ + ++  + K
Sbjct: 932  AQGIAESLRRLK 943


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 429 PKSFLKSPAHQLKR*QIRFSNASNTTRIDSVDYAI-THFGINIFKQITSSQPGNMVV 596
           PK   +  A + +    ++ NAS++   DS+ +   T  G+N+F++    QPG+ VV
Sbjct: 58  PKPLWQQKAEETRELVAKYLNASSS---DSIAFTRDTTEGLNLFQRSMHFQPGDNVV 111


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 128 HDEIYTCFIHTGVFFSFASSN 66
           H ++Y+ FIHTG+    +SS+
Sbjct: 70  HPDLYSTFIHTGIATIVSSSD 90


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 152 MLFRVKRGFTKQLPDTESVSQIRFHNQFRSNLF*HNRP 265
           +L +V    +   PDTESV Q+   +  +S+LF   +P
Sbjct: 236 LLSKVNEKISDTFPDTESVRQLYQLSLKKSDLFAQKQP 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,240
Number of Sequences: 5004
Number of extensions: 64024
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)