Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30215
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0532 - 22992520-22992879,22993323-22993403,22993565-229936...    30   1.6  
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    28   6.4  

>01_05_0532 -
           22992520-22992879,22993323-22993403,22993565-22993639,
           22994140-22994301
          Length = 225

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 311 LTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTPAKKMT 475
           L  G   P ++P       +P+AN+ I QPS  +Y Q T    P+ S +   K T
Sbjct: 109 LDYGGNDPHVSPRVHQHSANPFANSSI-QPSAGSYGQATVGFAPRPSISDQSKNT 162


>08_02_1453 -
           27199228-27200579,27200712-27202646,27202905-27202966,
           27203525-27203545,27204305-27204344,27204345-27204792,
           27204866-27204964,27205071-27205394,27205446-27205574,
           27205657-27205875,27205976-27206194,27206436-27206669,
           27206773-27206943,27207466-27207577,27207955-27208010,
           27208083-27208181,27208901-27209134,27209258-27209311,
           27209363-27209422
          Length = 1955

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 320 GTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQ 445
           G    + +PN   PQ+  + +   IQP++Q  NQ+  +   Q
Sbjct: 379 GVPPSLASPNSAVPQFGSFQSQSTIQPNMQWPNQQEAQNASQ 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,625,213
Number of Sequences: 37544
Number of extensions: 358643
Number of successful extensions: 774
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)