Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30215
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81527-6|CAB04275.1| 739|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL033510-3|CAA22066.1| 323|Caenorhabditis elegans Hypothetical ... 30 1.4
Z92782-9|CAE17814.1| 329|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z82086-9|CAB04999.1| 330|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 28 7.6
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 28 7.6
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 28 7.6
AL021497-22|CAA16412.1| 330|Caenorhabditis elegans Hypothetical... 28 7.6
>Z81527-6|CAB04275.1| 739|Caenorhabditis elegans Hypothetical
protein F35E12.7a protein.
Length = 739
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +2
Query: 260 RPSGSINIQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIV 439
RP S ++L+ + T IPI N + + I PS+ T TTK+
Sbjct: 552 RPMQSTTTYQKLAQASSTASTTPIPITTQNISTASIATPSTKTPITPSLITTRSSTTKLS 611
Query: 440 P 442
P
Sbjct: 612 P 612
>AL033510-3|CAA22066.1| 323|Caenorhabditis elegans Hypothetical
protein Y40H7A.5 protein.
Length = 323
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 608 GEWRYHHVTWLTACYLLKYIYSKMCYSIIDTI 513
G + H++ WL ACYL +Y +C I +I
Sbjct: 95 GSFLEHNLIWLIACYLFRYYILYVCDPSIKSI 126
>Z92782-9|CAE17814.1| 329|Caenorhabditis elegans Hypothetical
protein F14F8.12 protein.
Length = 329
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 137 KHFHDEIYTCFIHTGVFFSFASSNFT 60
K+ +D+I+ CFI + VFF+F S T
Sbjct: 149 KYLNDDIFECFIISFVFFNFVISVLT 174
>Z82086-9|CAB04999.1| 330|Caenorhabditis elegans Hypothetical
protein ZK228.8 protein.
Length = 330
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 624 GLFFNKGATGFPLWIRFSGS 683
G+F+NKG T P+W+ G+
Sbjct: 308 GMFYNKGDTSRPIWMTVHGT 327
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +2
Query: 293 LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 457
L ++ G T + ++ +F AP+Y +AN + + PS +T Q+ + V +K T
Sbjct: 811 LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 870
Query: 458 PAKKMTDTFFKRK*HDPD 511
P K T ++ D D
Sbjct: 871 PPKVFDPTVYEMPLPDDD 888
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical protein
F11A10.1a protein.
Length = 1291
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +2
Query: 293 LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 457
L ++ G T + ++ +F AP+Y +AN + + PS +T Q+ + V +K T
Sbjct: 813 LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 872
Query: 458 PAKKMTDTFFKRK*HDPD 511
P K T ++ D D
Sbjct: 873 PPKVFDPTVYEMPLPDDD 890
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical protein
F11A10.1b protein.
Length = 1289
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +2
Query: 293 LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 457
L ++ G T + ++ +F AP+Y +AN + + PS +T Q+ + V +K T
Sbjct: 811 LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 870
Query: 458 PAKKMTDTFFKRK*HDPD 511
P K T ++ D D
Sbjct: 871 PPKVFDPTVYEMPLPDDD 888
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical protein
F11A10.1a protein.
Length = 1291
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +2
Query: 293 LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 457
L ++ G T + ++ +F AP+Y +AN + + PS +T Q+ + V +K T
Sbjct: 813 LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 872
Query: 458 PAKKMTDTFFKRK*HDPD 511
P K T ++ D D
Sbjct: 873 PPKVFDPTVYEMPLPDDD 890
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expression
abnormal protein protein.
Length = 1291
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +2
Query: 293 LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 457
L ++ G T + ++ +F AP+Y +AN + + PS +T Q+ + V +K T
Sbjct: 813 LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 872
Query: 458 PAKKMTDTFFKRK*HDPD 511
P K T ++ D D
Sbjct: 873 PPKVFDPTVYEMPLPDDD 890
>AL021497-22|CAA16412.1| 330|Caenorhabditis elegans Hypothetical
protein ZK228.8 protein.
Length = 330
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 624 GLFFNKGATGFPLWIRFSGS 683
G+F+NKG T P+W+ G+
Sbjct: 308 GMFYNKGDTSRPIWMTVHGT 327
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,876
Number of Sequences: 27780
Number of extensions: 349337
Number of successful extensions: 902
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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