Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30215
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     29   0.043
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.7  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 29.1 bits (62), Expect = 0.043
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
 Frame = +2

Query: 356 APQYSPYANNVIIQPSIQTYNQ-------ETTKIVPQKSGTPAK 466
           +PQY   +++++ QPSI+TY Q       +T +I PQ+  T +K
Sbjct: 439 SPQYPSTSSHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLTLSK 482


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 588 MVVSPFSIHDIIGLFFN 638
           M +SP  IHD   LFF+
Sbjct: 378 MALSPVDIHDDRTLFFH 394


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 694 RMPKLPLNLIQSGNPVAPLLKKSPIMS*MENGDTTMLP 581
           R+ + P+    S NPV+P+    P+   +   +T +LP
Sbjct: 428 RVERDPILTPPSSNPVSPVPSPDPLDLAIPVRETLILP 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,190
Number of Sequences: 438
Number of extensions: 4585
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)