Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30213
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   2.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   3.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   3.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   3.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.8  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   9.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   9.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.0  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 553 SIGFNCWW 576
           SIGFNC+W
Sbjct: 364 SIGFNCFW 371


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 518 HCYPMQHQILPNLLGLIVG 574
           H +PM H +LP  + + +G
Sbjct: 363 HAHPMHHDMLPETMHMGMG 381



 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 623 GEAHHESLQTLHVPTNHQQLNP 558
           G  +H  L + H P  H Q+ P
Sbjct: 82  GNYYHPQLHSHHGPPIHHQIRP 103


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 518 HCYPMQHQILPNLLGLIVG 574
           H +PM H +LP  + + +G
Sbjct: 363 HAHPMHHDMLPETMHMGMG 381



 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 623 GEAHHESLQTLHVPTNHQQLNP 558
           G  +H  L + H P  H Q+ P
Sbjct: 82  GNYYHPQLHSHHGPPIHHQIRP 103


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 623 GEAHHESLQTLHVPTNHQQLNP 558
           G  +H  L + H P  H Q+ P
Sbjct: 82  GNYYHPQLHSHHGPPIHHQIRP 103


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 650 TTSPSRWFTGEAHHESLQTLHVPTNH 573
           T+SPS  FT         T H  T+H
Sbjct: 262 TSSPSNRFTRHLIQRRTHTRHTTTSH 287


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 623 GEAHHESLQTLHVPTNHQQLNP 558
           G  +H  L + H P  H Q+ P
Sbjct: 82  GNYYHPQLHSHHGPPIHHQIRP 103


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 502 PLNLWTLLSHATPNSSQSIGFNCWWFV 582
           P N  +  +H     S S+  N WW V
Sbjct: 166 PFNTMSGATHHGGIKSDSVTSNAWWDV 192


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 498  SLCCTKQSQEM 466
            +LCCTK+ +E+
Sbjct: 1363 NLCCTKKKEEL 1373


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 498  SLCCTKQSQEM 466
            +LCCTK+ +E+
Sbjct: 1363 NLCCTKKKEEL 1373


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 498  SLCCTKQSQEM 466
            +LCCTK+ +E+
Sbjct: 1363 NLCCTKKKEEL 1373


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 498  SLCCTKQSQEM 466
            +LCCTK+ +E+
Sbjct: 1363 NLCCTKKKEEL 1373


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 242 YDSTSSQNKFFPG 204
           +DS S QN  FPG
Sbjct: 740 FDSRSRQNSSFPG 752


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 597 NTSRANKPPTIKPNR 553
           N++R+NK PT  P+R
Sbjct: 372 NSARSNKYPTRVPHR 386


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 121 PRWVVAASILVTSSSLRASTSNPPDIV 41
           P+W  A   L  SSS + S    P IV
Sbjct: 79  PQWPFAWGSLXRSSSPQTSAPTGPPIV 105


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +2

Query: 86  CHQNACCNHPSWGRKC*LPDG 148
           CH N  C     G +C  P G
Sbjct: 269 CHNNGTCLDKVGGFECKCPPG 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,121
Number of Sequences: 336
Number of extensions: 4441
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)