Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30213
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   109   3e-25
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   104   1e-23
SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11 ...    28   1.4  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    26   4.2  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   5.5  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    26   5.5  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   5.5  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   7.3  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   9.7  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    25   9.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.7  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   9.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  109 bits (263), Expect = 3e-25
 Identities = 53/72 (73%), Positives = 57/72 (79%)
 Frame = +2

Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
           PADV VISSRP+G RAVLKFAAHTGAT I GRFTPG FTN I   +REPRL+IV DP  D
Sbjct: 74  PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRAD 133

Query: 434 HQPITEASYVNI 469
            Q I EAS+VNI
Sbjct: 134 AQAIKEASFVNI 145



 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
 Frame = +3

Query: 63  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 242
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 243 AIENPL-MC--SSSHHGPSVSVLY*SLPRTPVLRLLRGVSHQVLLLTRFKLHSVNLVS*L 413
            IENP  +C  SS  +G    + + +      +       +    +TR       L+  +
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITR-TYREPRLI--I 126

Query: 414 YWTLHKTINPLLKLHMSTFPVIALCNTDFPTKFVDIAIPCNTK 542
                     + +      PVIALC+TD     VD+AIP N K
Sbjct: 127 VTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNK 169


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  104 bits (250), Expect = 1e-23
 Identities = 49/72 (68%), Positives = 56/72 (77%)
 Frame = +2

Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
           PADV V+S+R +G RAVLKFAAHTGAT I GRFTPG FTN I   +REPRL++V DP  D
Sbjct: 73  PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRAD 132

Query: 434 HQPITEASYVNI 469
            Q I EAS+VNI
Sbjct: 133 AQAIKEASFVNI 144



 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
 Frame = +3

Query: 51  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 230
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 231 RAVVAIENPL-MC--SSSHHGPSVSVLY*SLPRTPVLRLLRGVSHQVLLLTRFKLHSVNL 401
           R +  IENP  +C  S+  +G    + + +      +       +    +TR       L
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITR-TYREPRL 123

Query: 402 VS*LYWTLHKTINPLLKLHMSTFPVIALCNTDFPTKFVDIAIPCNTK 542
           +  +          + +      PVIALC+TD     VDIAIP N K
Sbjct: 124 I--VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNK 168


>SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 660 NSTNNIPKPMVHGGSTPR-KPSNTSRANKPPTIKPNR 553
           N  NNIP+PM+   + P+  PS +S+  +    KP +
Sbjct: 22  NYANNIPEPMMVSVAPPKANPSVSSKTKQQQHFKPGK 58


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 635 RWF-TGEAHHESLQTLHVPTNHQQLNPIDWEEFGVAWDSNVHKFSGEVCVAQSNH 474
           +W+ TG +   + +  +  T  + LNPI  E F  +WDS+  K   E+   Q +H
Sbjct: 87  KWYITGLSREYASRNKNYGTEKKPLNPILGELFYGSWDSSKGKV--ELTAEQVSH 139


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -2

Query: 269 RTHQRVLDGYDSTSSQ--NKFFPGTTQVDHMGTISTSFVDIGLHLEVN 132
           RT   +    DSTS    NK+  G   V  +   S S  DIGLH E +
Sbjct: 345 RTSAEMFTTVDSTSRAIVNKYSLGNN-VSTVNPFSKSLYDIGLHAETD 391


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 456 HMSTFPVIALCNTDFPTKFVDIAIPCNTKFFPI 554
           H S    +  C  DFP  F+  A  C T+ F I
Sbjct: 375 HDSYIHNVVQCLDDFPWLFLTTAFDCYTRIFDI 407


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 266 THQRVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHLEVN 132
           T Q ++D  D+   +  +    T V+HMG+     +D G++   N
Sbjct: 118 TEQDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFN 162


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 563 NPIDWEEFGVAWDSNVHKF 507
           N + W+EF   W+  VH F
Sbjct: 424 NTVTWDEFSREWNKPVHVF 442


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -2

Query: 194 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 45
           VD+ G I  S   I   LE+N    K GG    F G  F +  E V  + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 615 TPRKPSNTSRANKPPTIKPNR 553
           TP+K SNT R NK  T K  +
Sbjct: 337 TPKKASNTPRRNKSNTQKSRK 357


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 489 NTDFPTKFVDIAIPCNTKFFPIY 557
           N+ F  K +++AIP   KF P+Y
Sbjct: 280 NSFFTAKALNVAIPGGPKFEPLY 302


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 154  MSTNDVLMVPM*STCVVPGKNLFWLLVL 237
            M+ N V  + +  T   PG N FW L++
Sbjct: 920  MTLNPVFQIGLNGTTHSPGNNSFWPLII 947


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +2

Query: 296 RAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLD---PAQD 433
           R  LK+   +    +E   T G+F + + A F  PR  I L    P QD
Sbjct: 5   RLRLKYENQSAVETVEANATVGSFLDLVAAKFSLPRNSIALKFGFPPQD 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,963
Number of Sequences: 5004
Number of extensions: 69904
Number of successful extensions: 185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)