Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30213
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 110 8e-25
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 107 8e-24
01_07_0163 + 41578264-41578469,41578537-41579422 32 0.47
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 30 1.9
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928 30 1.9
03_02_0879 + 12097602-12098120,12099215-12099254,12099550-120996... 29 2.5
03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093 29 3.3
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 4.3
12_02_0744 - 22704637-22705341 28 5.7
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 5.7
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 28 5.7
06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568... 28 7.6
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 7.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 110 bits (265), Expect = 8e-25
Identities = 69/173 (39%), Positives = 95/173 (54%), Gaps = 3/173 (1%)
Frame = +3
Query: 33 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 212
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 213 KLVLAARAVVAIENP--LMCSSSHHGPSVSVLY*SLPRTPVLRLLRGVSHQVLLLTRFKL 386
KL LAAR +VAIENP ++ S+ +VL + + G H T
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVL--KFAQYTGAHAIAG-RHTPGTFTNQLQ 117
Query: 387 HSVNLVS*LYWTLHKTIN-PLLKLHMSTFPVIALCNTDFPTKFVDIAIPCNTK 542
S + L T +T + P+ + + P IA C+TD P ++VDI IP N K
Sbjct: 118 TSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK 170
Score = 101 bits (242), Expect = 5e-22
Identities = 59/124 (47%), Positives = 74/124 (59%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
P D+ V S+RP+GQRAVLKFA +TGA I GR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 434 HQPITEASYVNISCDCFVQHRLPH*ICGHCYPMQHQILPNLLGLIVGGLLAREVFEGFRG 613
HQPI E++ NI F P P ++ N +G + LLAR V + RG
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK-GRNSIGCLF-WLLARMVLQ-MRG 191
Query: 614 VLPP 625
+ P
Sbjct: 192 TILP 195
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 107 bits (257), Expect = 8e-24
Identities = 66/162 (40%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Frame = +3
Query: 66 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 245
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 246 IENP--LMCSSSHHGPSVSVLY*SLPRTPVLRLLRGVSHQVLLLTRFKLHSVNLVS*LYW 419
IENP ++ S+ +VL + + G H T S + L
Sbjct: 72 IENPQDIIVQSARPYGQRAVL--KFAQYTGAHAIAG-RHTPGTFTNQLQTSFSEPRLLIL 128
Query: 420 TLHKTIN-PLLKLHMSTFPVIALCNTDFPTKFVDIAIPCNTK 542
T +T + P+ + + P IA C+TD P ++VDI IP N K
Sbjct: 129 TDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK 170
Score = 101 bits (241), Expect = 7e-22
Identities = 47/77 (61%), Positives = 56/77 (72%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
P D+ V S+RP+GQRAVLKFA +TGA I GR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 434 HQPITEASYVNISCDCF 484
HQPI E++ NI F
Sbjct: 135 HQPIKESALGNIPTIAF 151
>01_07_0163 + 41578264-41578469,41578537-41579422
Length = 363
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 463 QHFL*LLCATQTSPLNLWTLLSHATPNSSQSIG 561
+HF+ L SPLN+W L + + P+SS +G
Sbjct: 164 KHFVMLCLGVGGSPLNMWPLAASSIPSSSSLVG 196
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +2
Query: 209 GKTCSGCSCCRSHREPA-DVFVISSRPFGQRAVLKFAAHTGATPIEGRFTPGAFTNQIQA 385
G+ SGC CR D ++ R RAV AA + P R+TPG +
Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113
Query: 386 AFREPRLLIVLD 421
RE IV D
Sbjct: 114 LVREMMKSIVAD 125
>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
Length = 839
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Frame = -3
Query: 505 VGKSVLHKAITGNVDI*SFSNGLMVLCRVQYNQETRFTE--CSLNL-----VSKSTWCET 347
+GK+ L K + + + F+ G V + N E F+ C L+ V+K++W E
Sbjct: 161 LGKTTLAKVVYEKLKV-QFACGFFVTMSLNPNMEKIFSNMLCQLDKEKYSHVTKASWGEA 219
Query: 346 PLNRRSTGVRGK 311
L +R+TG+ K
Sbjct: 220 QLIKRNTGIPSK 231
>03_02_0879 +
12097602-12098120,12099215-12099254,12099550-12099601,
12099946-12100008,12100079-12100148,12100452-12100778
Length = 356
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 660 NSTNNIPKPMVHGGSTPRKPSNTSRANKPPTIKPNRLG 547
+ST ++ P +TP +PSN+ + + PNR+G
Sbjct: 274 SSTQSVQDPSSGDTATPSEPSNSVDKDSEAALDPNRIG 311
>03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093
Length = 435
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 660 NSTNNIPKPMVHGGSTPRKPSNTSRANKPPTIKPNRLGRIWCCMG*QCPQI 508
N T + P+ H S P +P+ +SR +PP+ I C +CP +
Sbjct: 161 NETVSSGGPIPHVTSQPTRPNTSSREQQPPSPCSRSHDLILCNSQSRCPTV 211
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 133 TFSAPRWVVAASILVTSSSLRASTSNP 53
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>12_02_0744 - 22704637-22705341
Length = 234
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 618 STPRKPSNTSRA-NKPPTIKPNRLGRIW 538
S+P S++SR + PPT +R+GRIW
Sbjct: 101 SSPAPTSSSSRGVSPPPTSGRSRIGRIW 128
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 140 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 247
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 274 LITALRSACCTEVCRAHRCYAY*GAFHTRCF 366
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>06_03_0272 +
19053455-19053587,19054665-19056627,19056827-19056887,
19056975-19057198,19057573-19057642,19058453-19058515
Length = 837
Score = 27.9 bits (59), Expect = 7.6
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 17/129 (13%)
Frame = +2
Query: 227 CSCCRS-HREPADVFVISSRPFG---QRAVLKFAAHTGATPIEG------RFTPGAFTNQ 376
CSC HRE + P G QRA ++ GA P+EG R+T
Sbjct: 347 CSCFNCYHRE---FLPVQGTPLGFTDQRAPYLMNSY-GAYPVEGPLYGQQRYTSRGTNTS 402
Query: 377 IQAAFREPRLLIVLDPAQDHQPITEASYVNISCDCFVQHRLP--H*ICGH-----CYPMQ 535
+Q R + PAQ +PI + I +C+ R+P H + G C
Sbjct: 403 LQR--NHLRTNVRKKPAQTCEPIAGGAPFTICYNCYEVLRIPMKHSLLGKEYKLMCGSCS 460
Query: 536 HQILPNLLG 562
H IL NL G
Sbjct: 461 HAILVNLDG 469
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 176 WYPCDQLASYLGKTCSGCSCCRSHREP 256
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,252,192
Number of Sequences: 37544
Number of extensions: 511496
Number of successful extensions: 1288
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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