Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30213
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               134   8e-32
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   5.9  
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  134 bits (323), Expect = 8e-32
 Identities = 71/114 (62%), Positives = 83/114 (72%)
 Frame = +2

Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
           PADV VIS+RP+GQRA+LK+A+HTGATPI GRFTPG FTNQIQAAFREPRLLIV DP  D
Sbjct: 71  PADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRID 130

Query: 434 HQPITEASYVNISCDCFVQHRLPH*ICGHCYPMQHQILPNLLGLIVGGLLAREV 595
           HQP+TEASYVNI    F     P        P  ++ + + +GL+   LLAREV
Sbjct: 131 HQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGI-HSIGLMF-WLLAREV 182



 Score =  132 bits (319), Expect = 2e-31
 Identities = 75/170 (44%), Positives = 100/170 (58%), Gaps = 4/170 (2%)
 Frame = +3

Query: 45  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 224
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 225 AARAVVAIENPL-MC--SSSHHGPSVSVLY*S-LPRTPVLRLLRGVSHQVLLLTRFKLHS 392
           AAR +V IENP  +C  S+  +G    + Y S    TP+       +    +   F+   
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 393 VNLVS*LYWTLHKTINPLLKLHMSTFPVIALCNTDFPTKFVDIAIPCNTK 542
           + +V            P+ +      PVIA CNTD P + VD+AIPCN K
Sbjct: 121 LLIVC----DPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNK 166


>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 611 HESLQTLHVPTNHQQLNPIDWEEFGVAWD--SNVHKFSGEVCVAQSN 477
           H+S  T+H+ T H  L P   +E G  +   S++ K   +VC  + N
Sbjct: 843 HDSTLTMHIRTRHDHLRPFKCDECGNTFGRLSHLRKHVRKVCGNRRN 889


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 210 EKLVLAARAVVAIENPLMCSSSHHGPSVSVL 302
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 482 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 512


>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 210 EKLVLAARAVVAIENPLMCSSSHHGPSVSVL 302
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 267 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 297


>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 683

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 657 STNNIPKPMVHGGSTPRKPSNTSRANKPPTIKPNRLGR 544
           ST   P+   H    P+KP+   R N P T KP R  R
Sbjct: 508 STTRRPRKSTH---RPKKPTRRPRKNSPRTRKPTRRPR 542


>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 657 STNNIPKPMVHGGSTPRKPSNTSRANKPPTIKPNRLGR 544
           ST   P+   H    P+KP+   R N P T KP R  R
Sbjct: 145 STTRRPRKSTH---RPKKPTRRPRKNSPRTRKPTRRPR 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,213,457
Number of Sequences: 59808
Number of extensions: 574190
Number of successful extensions: 1615
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)