Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30213
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 114 6e-26
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 31 0.55
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 0.55
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 0.55
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 0.55
Z71258-4|CAA95783.2| 423|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical ... 29 3.9
U40427-5|AAP82652.1| 356|Caenorhabditis elegans Abnormal cell m... 28 6.8
U40427-4|AAA81470.2| 362|Caenorhabditis elegans Abnormal cell m... 28 6.8
AF150958-1|AAD43178.1| 362|Caenorhabditis elegans guidance prot... 28 6.8
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 28 6.8
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 28 6.8
Z81130-6|CAB03419.4| 312|Caenorhabditis elegans Hypothetical pr... 27 8.9
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 114 bits (274), Expect = 6e-26
Identities = 52/83 (62%), Positives = 62/83 (74%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
PADV V+S+RP+ QRA+LKFAAHTGAT I GRF+PG TNQIQ F+EPRLL++ DP D
Sbjct: 71 PADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRID 130
Query: 434 HQPITEASYVNISCDCFVQHRLP 502
HQ +TEASYV + FV P
Sbjct: 131 HQAVTEASYVGVPVISFVNTESP 153
Score = 101 bits (243), Expect = 3e-22
Identities = 45/71 (63%), Positives = 57/71 (80%)
Frame = +3
Query: 45 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 224
MSGG AL EEDV K+LA HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEKL+L
Sbjct: 1 MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60
Query: 225 AARAVVAIENP 257
AARA+ A+ENP
Sbjct: 61 AARAIAAVENP 71
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3127 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3180
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3025 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3078
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3026 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3079
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3108 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3161
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3127 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3180
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3025 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3078
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3026 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3079
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3108 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3161
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 290 GQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 451
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z71258-4|CAA95783.2| 423|Caenorhabditis elegans Hypothetical
protein C01H6.4 protein.
Length = 423
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 483 LCNTDFPTKFVDIAIPCNTKFFPIYWV 563
LC+ D+PT I +P T FP++ V
Sbjct: 274 LCHVDYPTTLFFIGLPLGTITFPLFEV 300
>AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical
protein Y32B12B.6 protein.
Length = 338
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 243 AIENPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRGVSHQVLLLTRFKLHSVNLVS*LYWT 422
+I+ L S+HH V +L S P L++ + + + + R K H +N S Y T
Sbjct: 91 SIQELLHDISAHHMNRVFLLLNSYPENSNLKIEQMLREETSFVARQKYHEMNWDSWYYIT 150
Query: 423 LHKTI 437
L T+
Sbjct: 151 LVSTV 155
>U40427-5|AAP82652.1| 356|Caenorhabditis elegans Abnormal cell
migration protein13, isoform b protein.
Length = 356
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 496 TSPLNLWTLLSHATPNSSQSIGFNCWW 576
TS N TL H+ PN S S GF W
Sbjct: 140 TSSHNALTLWWHSNPNGSNSKGFKLHW 166
>U40427-4|AAA81470.2| 362|Caenorhabditis elegans Abnormal cell
migration protein13, isoform a protein.
Length = 362
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 496 TSPLNLWTLLSHATPNSSQSIGFNCWW 576
TS N TL H+ PN S S GF W
Sbjct: 146 TSSHNALTLWWHSNPNGSNSKGFKLHW 172
>AF150958-1|AAD43178.1| 362|Caenorhabditis elegans guidance protein
MIG-13 protein.
Length = 362
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 496 TSPLNLWTLLSHATPNSSQSIGFNCWW 576
TS N TL H+ PN S S GF W
Sbjct: 146 TSSHNALTLWWHSNPNGSNSKGFKLHW 172
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 15 RLVVTQISATMSGGLDVLALNEED-VTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 191
R+V T+ +L ++ D T LAA L ++++ +E Y+ KR TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203
Query: 192 NLRRTWEKLVLAARAVVAIENPL 260
T +V + +A+ L
Sbjct: 204 EDSATILNIVDEMKKTLAVVEEL 226
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 15 RLVVTQISATMSGGLDVLALNEED-VTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 191
R+V T+ +L ++ D T LAA L ++++ +E Y+ KR TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203
Query: 192 NLRRTWEKLVLAARAVVAIENPL 260
T +V + +A+ L
Sbjct: 204 EDSATILNIVDEMKKTLAVVEEL 226
>Z81130-6|CAB03419.4| 312|Caenorhabditis elegans Hypothetical
protein T23G11.7b protein.
Length = 312
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 651 NNIPKPMVHGGSTPRKPSNTSRANKPPTIKPNR 553
NNIP P STP PS+T + PP +P +
Sbjct: 224 NNIPPPSY--SSTPNLPSHTPFSAPPPRNQPQQ 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,527,972
Number of Sequences: 27780
Number of extensions: 424277
Number of successful extensions: 1043
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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