Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30213
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   6.0  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 411 LYWTLHKTINPLLKLHMSTFPVIALCNTDFP-TKFVDIAIPCN 536
           +++  H  ++ + + H +T P   +   DFP  +  DI +  N
Sbjct: 400 IFYRWHAFVDDVFQEHKNTLPQYTVQQLDFPGIEIADIKLTTN 442


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -1

Query: 642  PKPMVHGGSTPRKPSNTSRANKPPTIKP 559
            P P   G  TP +P+N  +       KP
Sbjct: 989  PSPFKRGRYTPPQPANAQQGQAQAQAKP 1016


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 185 CDQLASYLGKTCSGCSCCRSHREPADVFVISSRPFGQRAV 304
           CD      G  CS  S   S  +  + FV  S+ F +R++
Sbjct: 7   CDLATPRTGTNCSSGSSSDSDGQTDEGFVGDSQGFFRRSI 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,580
Number of Sequences: 438
Number of extensions: 4997
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)