Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30213
(660 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 102 2e-22
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 100 1e-21
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 100 1e-21
At2g22340.1 68415.m02651 hypothetical protein 33 0.22
At4g17020.2 68417.m02567 transcription factor-related contains w... 31 0.51
At4g17020.1 68417.m02568 transcription factor-related contains w... 31 0.51
At1g28280.1 68414.m03471 VQ motif-containing protein contains PF... 31 0.68
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.6
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 29 2.7
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 102 bits (245), Expect = 2e-22
Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Frame = +3
Query: 66 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 245
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 246 IENP--LMCSSSHHGPSVSVLY*SLPRTPVLRLLRGVSHQVLLLTRFKLHSVNLVS*LYW 419
IENP ++ S+ +VL + + G H T S + L
Sbjct: 72 IENPQDIIVQSARPYGQRAVL--KFAQYTGANAIAG-RHTPGTFTNQMQTSFSEPRLLIL 128
Query: 420 TLHKTIN-PLLKLHMSTFPVIALCNTDFPTKFVDIAIPCNTK 542
T +T + P+ + + P+IA C+TD P +FVDI IP N K
Sbjct: 129 TDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNK 170
Score = 101 bits (241), Expect = 6e-22
Identities = 47/77 (61%), Positives = 55/77 (71%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
P D+ V S+RP+GQRAVLKFA +TGA I GR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134
Query: 434 HQPITEASYVNISCDCF 484
HQPI E + NI F
Sbjct: 135 HQPIKEGALGNIPIIAF 151
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 100 bits (239), Expect = 1e-21
Identities = 62/158 (39%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Frame = +3
Query: 78 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 257
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 258 --LMCSSSHHGPSVSVLY*SLPRTPVLRLLRGVSHQVLLLTRFKLHSVNLVS*LYWTLHK 431
++ S+ +VL + + + G H T S + L T +
Sbjct: 77 KDIIVQSARPYGQRAVL--KFAQYTGVNAIAG-RHTPGTFTNQMQTSFSEPRLLILTDPR 133
Query: 432 TIN-PLLKLHMSTFPVIALCNTDFPTKFVDIAIPCNTK 542
T + P+ + + P IA C+TD P FVDI IP N K
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNK 171
Score = 99.5 bits (237), Expect = 2e-21
Identities = 46/77 (59%), Positives = 54/77 (70%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
P D+ V S+RP+GQRAVLKFA +TG I GR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 434 HQPITEASYVNISCDCF 484
HQPI E + NI F
Sbjct: 136 HQPIKEGALGNIPTIAF 152
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 100 bits (239), Expect = 1e-21
Identities = 62/158 (39%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Frame = +3
Query: 78 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 257
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 258 --LMCSSSHHGPSVSVLY*SLPRTPVLRLLRGVSHQVLLLTRFKLHSVNLVS*LYWTLHK 431
++ S+ +VL + + + G H T S + L T +
Sbjct: 77 KDIIVQSARPYGQRAVL--KFAQYTGVNAIAG-RHTPGTFTNQMQTSFSEPRLLILTDPR 133
Query: 432 TIN-PLLKLHMSTFPVIALCNTDFPTKFVDIAIPCNTK 542
T + P+ + + P IA C+TD P FVDI IP N K
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNK 171
Score = 99.5 bits (237), Expect = 2e-21
Identities = 46/77 (59%), Positives = 54/77 (70%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIEGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
P D+ V S+RP+GQRAVLKFA +TG I GR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 434 HQPITEASYVNISCDCF 484
HQPI E + NI F
Sbjct: 136 HQPIKEGALGNIPTIAF 152
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 116 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 235
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At4g17020.2 68417.m02567 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 462
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 651 NNIPKPMVHGGSTPRKPSNTSRANKPPTIK 562
NN+ K ++ GG PR+P N+ A K P+++
Sbjct: 108 NNLQKHIISGGVLPREPMNSDNAIKLPSLQ 137
>At4g17020.1 68417.m02568 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 452
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 651 NNIPKPMVHGGSTPRKPSNTSRANKPPTIK 562
NN+ K ++ GG PR+P N+ A K P+++
Sbjct: 108 NNLQKHIISGGVLPREPMNSDNAIKLPSLQ 137
>At1g28280.1 68414.m03471 VQ motif-containing protein contains
PF05678: VQ motif
Length = 247
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 657 STNNIPKPMVHGGSTPRKPSNTSRANKPPT 568
+TN IP P H + S++S +NKPPT
Sbjct: 10 ATNLIPSPRCHNSNNSCGMSSSSESNKPPT 39
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 353 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 454
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = +3
Query: 36 SATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 215
S+++S +++LA ++ + ++A T L E ++ + ++ GT + + E
Sbjct: 647 SSSLSEAIELLATSDNRIGLLIAETQLLSEEVEKLKLTSGGHR----GTDDLVRKMLTEV 702
Query: 216 LVLAARAVVAIENPLMCSSSHHGPSV 293
L+ AR + + L CS S HG SV
Sbjct: 703 LIDNARLRKQVNSVLRCSLSGHGISV 728
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,621,395
Number of Sequences: 28952
Number of extensions: 391456
Number of successful extensions: 1017
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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