Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30210
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 92 6e-20
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 92 6e-20
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 29 0.38
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 28 0.87
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 27 2.0
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.7
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 2.7
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 6.2
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 25 8.1
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 25 8.1
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 25 8.1
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 91.9 bits (218), Expect = 6e-20
Identities = 43/57 (75%), Positives = 50/57 (87%)
Frame = +1
Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
+GR+ KRFRKA+C IVER +NSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPL
Sbjct: 52 AGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPL 108
Score = 41.5 bits (93), Expect = 9e-05
Identities = 37/135 (27%), Positives = 57/135 (42%)
Frame = +2
Query: 89 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMH 268
A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56
Query: 269 TSVSVKPSAPSWSAIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAII 448
T K + K + ++ ++ QVLV A+
Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116
Query: 449 NSGPREDSTRDRSCG 493
GPREDSTR S G
Sbjct: 117 ACGPREDSTRIGSAG 131
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +3
Query: 480 IGRAGTVRRQPVDCFTLAPEFNQSQSGLLCTGAR 581
IG AGTVRRQ VD L NQ+ + L+ GAR
Sbjct: 127 IGSAGTVRRQAVDVSPLR-RVNQALA-LITIGAR 158
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 91.9 bits (218), Expect = 6e-20
Identities = 43/57 (75%), Positives = 50/57 (87%)
Frame = +1
Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
+GR+ KRFRKA+C IVER +NSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPL
Sbjct: 52 AGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPL 108
Score = 39.1 bits (87), Expect = 5e-04
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Frame = +2
Query: 110 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSVS 280
T SL + E IKLF ++ V+V D+SL DYI++ + LPH+ T
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60
Query: 281 VKPSAPSWSAIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGP 460
K + K + ++ ++ QVLV A+ GP
Sbjct: 61 RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGP 120
Query: 461 REDSTRDRSCG 493
REDSTR S G
Sbjct: 121 REDSTRIGSAG 131
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +3
Query: 480 IGRAGTVRRQPVDCFTLAPEFNQSQSGLLCTGAR 581
IG AGTVRRQ VD L NQ+ + L+ GAR
Sbjct: 127 IGSAGTVRRQAVDVSPLR-RVNQALA-LITIGAR 158
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 29.5 bits (63), Expect = 0.38
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 280 RKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
R Q +H +L+M +GKK A +IV A II TGENP+
Sbjct: 118 RPFQVDSTVQHLVNLIMR---DGKKAKAEKIVATALSIIQKETGENPI 162
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 28.3 bits (60), Expect = 0.87
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 218 VKEKYAKYLPHSVAGMHTSVSVKPSAPSWSAIQTL 322
++E + KY H V + S+KPS P I TL
Sbjct: 92 IQEFHKKYPDHKVEDLSQLYSIKPSQPGIDEIDTL 126
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +2
Query: 188 SDMSLQDYISVKEKYAKYLPHSVAGMHTSVSVK 286
SDM ++ + ++K +Y+K +P++V + T ++K
Sbjct: 706 SDMGMEKFFNIKCRYSKLVPNTVVLVTTVKALK 738
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 185 VSDMSLQDYISVKEKYAKYLPHSVAGMHTSVSVKPSAPS 301
V++ + D V K ++P ++ H+ SVK ++PS
Sbjct: 612 VTNSGMPDIADVSLKSQSHVPPRISSNHSDTSVKSNSPS 650
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +2
Query: 110 TMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSVSVKP 289
T+ LP ++ E+K+ +D + + L D I V K+ LP+ + + TS+++
Sbjct: 1302 TVLLPWLQNL-ELKMDVENKTFD-SFTAVILIDLIEVTAKFTNDLPNEIEALWTSLALSR 1359
Query: 290 SAPSWSAI 313
+W+ I
Sbjct: 1360 HKSNWTVI 1367
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/41 (21%), Positives = 20/41 (48%)
Frame = +3
Query: 309 PFKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSGKY 431
P+K+ + + W + G+TY + + + L R+ + Y
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRETASTY 178
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 114 CLYHKPPTFLKSSFS 158
C H P TFL SSFS
Sbjct: 117 CFIHPPITFLSSSFS 131
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 125 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 247
+ ADI + FGR ++++++ + I+V+EKYAK P
Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQP 43
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.0 bits (52), Expect = 8.1
Identities = 19/84 (22%), Positives = 36/84 (42%)
Frame = +2
Query: 68 WNDDVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 247
W D + S VVE+ ++P+ + C D + +L+D + Y +
Sbjct: 47 WLRDTIPSLSNVVESQTIPEEDSTSYLNRLEEAFCRDFRCCGQTLEDLHQLIHHYEE--Q 104
Query: 248 HSVAGMHTSVSVKPSAPSWSAIQT 319
H+V ++V + S S +A Q+
Sbjct: 105 HAVLATDSAVPQEYSLDSNNAAQS 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,598
Number of Sequences: 5004
Number of extensions: 53950
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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