Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30210
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 100 7e-22
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 99 1e-21
09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122 29 3.6
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 29 3.6
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 3.6
03_06_0610 + 35052455-35053429,35054936-35055511 29 3.6
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 28 4.8
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 6.3
10_08_0619 + 19312935-19313570 27 8.3
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 27 8.3
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 8.3
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 27 8.3
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 100 bits (240), Expect = 7e-22
Identities = 46/57 (80%), Positives = 51/57 (89%)
Frame = +1
Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
+GRY+ KRFRKAQC IVER +NSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+
Sbjct: 48 AGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPI 104
Score = 67.3 bits (157), Expect = 8e-12
Identities = 43/118 (36%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Frame = +2
Query: 143 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSVAGMHTSVSVKPSAPSWSAIQT 319
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+ K P +
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 320 L**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGPREDSTRDRSCG 493
K + +++ + QV+V AIINSGPRED+TR S G
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAG 127
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 99 bits (238), Expect = 1e-21
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +1
Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
+GRY+ KRFRKAQC +VER +NSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+
Sbjct: 49 AGRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPI 105
Score = 62.5 bits (145), Expect = 2e-10
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 146 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSVAGMHTSVSVKPSAPSWSAIQTL 322
+KLF WS DVQV+D+SL DY++V K+A YLPH+ K P +
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 323 **CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGPREDSTRDRSCG 493
K + +++ + QV+V AIINSGPRED+TR S G
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAG 128
>09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122
Length = 370
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 379 HAFEIIHLLTGENPLASTRDCHYQLW 456
+AFEI L+ +NP+ RDC + ++
Sbjct: 336 NAFEIYTLIPSDNPMTFPRDCKHSIY 361
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 361 PSVFCHCSDRASLESLNGAPRWCTGLYGNA 272
PS + S + LESL+ WC GL+G +
Sbjct: 988 PSFYSAISKLSQLESLSVCAGWCQGLHGTS 1017
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 78 T*PRQAAWLWKPCLYHKPPTF 140
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -2
Query: 196 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 29
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 28 *K 23
K
Sbjct: 476 AK 477
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 324 NDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSGKYS*LPLSTLD 458
N+ ++ WQ T GRT Q C + N R +Y+ +PL +
Sbjct: 1594 NNYQALGWQATAGRTSMQRCAASTQWFNERISLARYAHVPLGNFE 1638
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 77 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 247
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>10_08_0619 + 19312935-19313570
Length = 211
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 380 CLTIRTAISFLPLFRPCIIREFEWRSTM 297
C I TA+ L F ++REFEW++ +
Sbjct: 141 CAGINTAMLHLEYFVANMVREFEWKAVV 168
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 359 WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGP 460
W Y L+N+ LK+ +E +LW VL ++ P
Sbjct: 617 WTYGLANIILKVPLSLMESSLWIVLTYYVVGFAP 650
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -2
Query: 232 VLLFNGNVVLQRHIRDLHIVATPSAEK 152
+++F+G++V+ + I+DLH T E+
Sbjct: 57 IVMFDGHIVVYKFIQDLHFFVTGGEEE 83
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 464 EDSTRDRSCGYSSSSAR*LFHPCA 535
+DS DRSC SS+ + FHP A
Sbjct: 2365 QDSPTDRSCKLSSTRRQIRFHPAA 2388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,787,817
Number of Sequences: 37544
Number of extensions: 361141
Number of successful extensions: 940
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -