BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30210 (584 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0) 107 9e-24 SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 30 1.2 SB_7128| Best HMM Match : Usp (HMM E-Value=8.3) 29 3.7 SB_50014| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4 SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) 28 6.4 SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4 SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5 SB_25791| Best HMM Match : GASA (HMM E-Value=9.9) 27 8.5 SB_22785| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5 SB_22509| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 8.5 >SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0) Length = 272 Score = 107 bits (256), Expect = 9e-24 Identities = 48/57 (84%), Positives = 53/57 (92%) Frame = +1 Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423 +GRYA KRFRKAQC IVER +NS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPL Sbjct: 121 AGRYAAKRFRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPL 177 Score = 85.8 bits (203), Expect = 2e-17 Identities = 52/127 (40%), Positives = 66/127 (51%) Frame = +2 Query: 98 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSV 277 VV + + A ++P+IKLFG+WS DVQVSD+SL DYI+VKEKY+ YLPH+ Sbjct: 69 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128 Query: 278 SVKPSAPSWSAIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSG 457 K P I K + ++ + QVLV AIINSG Sbjct: 129 FRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSG 188 Query: 458 PREDSTR 478 PREDSTR Sbjct: 189 PREDSTR 195 Score = 42.3 bits (95), Expect = 3e-04 Identities = 19/35 (54%), Positives = 26/35 (74%) Frame = +2 Query: 98 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 202 VV + + A ++P+IKLFG+WS DVQVSD+SL Sbjct: 6 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40 Score = 35.9 bits (79), Expect = 0.024 Identities = 22/34 (64%), Positives = 23/34 (67%) Frame = +3 Query: 480 IGRAGTVRRQPVDCFTLAPEFNQSQSGLLCTGAR 581 IGRAGTVRRQ VD L NQ+ LLCTGAR Sbjct: 196 IGRAGTVRRQAVDVSPLR-RVNQA-IWLLCTGAR 227 >SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) Length = 439 Score = 30.3 bits (65), Expect = 1.2 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 161 RWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSVSVKPS 292 RWSC Q + +++ Y+ KE ++ LP +SV+ PS Sbjct: 59 RWSCVTYQAKNQAVECYLPGKEPGSRVLPTRQRTRQSSVTYIPS 102 >SB_7128| Best HMM Match : Usp (HMM E-Value=8.3) Length = 278 Score = 28.7 bits (61), Expect = 3.7 Identities = 19/54 (35%), Positives = 28/54 (51%) Frame = +1 Query: 271 KRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLAST 432 +R RKAQ + RH N+ ++ R + KK + +H I LLTG + A T Sbjct: 45 RRHRKAQILLTRRHKNAQILVTRRH-KKAQTLLTGRHKKAQI-LLTGRHKKAQT 96 >SB_50014| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 615 Score = 27.9 bits (59), Expect = 6.4 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = +1 Query: 271 KRFRKAQCTIVERHSNSLMMHGRNNGKKL 357 +R +KAQ + RH + ++H NN L Sbjct: 586 RRHKKAQTLLTGRHKKAQILHNNNNNNNL 614 >SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) Length = 553 Score = 27.9 bits (59), Expect = 6.4 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Frame = +3 Query: 6 TVRGYNFYLVIEKYQSWPR--RTGMTT*PR 89 +V G NF++V++ + WP T TT P+ Sbjct: 242 SVHGVNFFVVVDAHSKWPEIIATSSTTAPK 271 >SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1503 Score = 27.9 bits (59), Expect = 6.4 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Frame = +3 Query: 48 QSWPRRTGMTT*PRQAAWLWKPCLYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLKR 227 ++WP T + T +A W W Y TFL ++ C ++ R T+P K Sbjct: 706 EAWPEPTPLITSALRADWTWLGRRYGLATTFLI-------ISLWCLFILAKDRRTYPRKL 758 Query: 228 ST--QNIYLIQWQVCTQA 275 N+ L+ +C A Sbjct: 759 HALFMNLLLLFVSICRAA 776 >SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 707 Score = 27.5 bits (58), Expect = 8.5 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 Query: 268 VHTCH*MR*IFCVLLFNGNVVLQRHIRDLH 179 V + H + IFC LF+G +L+RH+ H Sbjct: 396 VSSNHDLSCIFCRKLFHGKSLLERHVSKRH 425 >SB_25791| Best HMM Match : GASA (HMM E-Value=9.9) Length = 234 Score = 27.5 bits (58), Expect = 8.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -1 Query: 347 PLFRPCIIREFEWRSTMVHWA 285 PL R CII F W S++ +W+ Sbjct: 150 PLGRLCIISTFTWTSSLQNWS 170 >SB_22785| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 164 Score = 27.5 bits (58), Expect = 8.5 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 428 VLVTAIINSGPREDSTRDRSCGYSS 502 V +TAI+N +STR RSCG S+ Sbjct: 103 VNLTAILNLDYSTESTRGRSCGLSA 127 >SB_22509| Best HMM Match : ANF_receptor (HMM E-Value=0) Length = 752 Score = 27.5 bits (58), Expect = 8.5 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +3 Query: 390 NYSLVNWRKPSGKYS*LPLST 452 NYS+VN+RK GKY+ L + + Sbjct: 454 NYSIVNFRKVDGKYTYLKVGS 474 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,692,147 Number of Sequences: 59808 Number of extensions: 420542 Number of successful extensions: 1043 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 930 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1035 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1410146228 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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