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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30210
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               107   9e-24
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     30   1.2  
SB_7128| Best HMM Match : Usp (HMM E-Value=8.3)                        29   3.7  
SB_50014| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)                   28   6.4  
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_25791| Best HMM Match : GASA (HMM E-Value=9.9)                      27   8.5  
SB_22785| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_22509| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   8.5  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  107 bits (256), Expect = 9e-24
 Identities = 48/57 (84%), Positives = 53/57 (92%)
 Frame = +1

Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
           +GRYA KRFRKAQC IVER +NS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPL
Sbjct: 121 AGRYAAKRFRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPL 177



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 52/127 (40%), Positives = 66/127 (51%)
 Frame = +2

Query: 98  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSV 277
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+        
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128

Query: 278 SVKPSAPSWSAIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSG 457
             K   P    I            K      +     ++      +   QVLV AIINSG
Sbjct: 129 FRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSG 188

Query: 458 PREDSTR 478
           PREDSTR
Sbjct: 189 PREDSTR 195



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +2

Query: 98  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 202
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40



 Score = 35.9 bits (79), Expect = 0.024
 Identities = 22/34 (64%), Positives = 23/34 (67%)
 Frame = +3

Query: 480 IGRAGTVRRQPVDCFTLAPEFNQSQSGLLCTGAR 581
           IGRAGTVRRQ VD   L    NQ+   LLCTGAR
Sbjct: 196 IGRAGTVRRQAVDVSPLR-RVNQA-IWLLCTGAR 227


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 161 RWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSVSVKPS 292
           RWSC   Q  + +++ Y+  KE  ++ LP       +SV+  PS
Sbjct: 59  RWSCVTYQAKNQAVECYLPGKEPGSRVLPTRQRTRQSSVTYIPS 102


>SB_7128| Best HMM Match : Usp (HMM E-Value=8.3)
          Length = 278

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 271 KRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLAST 432
           +R RKAQ  +  RH N+ ++  R + KK   +   +H    I LLTG +  A T
Sbjct: 45  RRHRKAQILLTRRHKNAQILVTRRH-KKAQTLLTGRHKKAQI-LLTGRHKKAQT 96


>SB_50014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 271 KRFRKAQCTIVERHSNSLMMHGRNNGKKL 357
           +R +KAQ  +  RH  + ++H  NN   L
Sbjct: 586 RRHKKAQTLLTGRHKKAQILHNNNNNNNL 614


>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
          Length = 553

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 6   TVRGYNFYLVIEKYQSWPR--RTGMTT*PR 89
           +V G NF++V++ +  WP    T  TT P+
Sbjct: 242 SVHGVNFFVVVDAHSKWPEIIATSSTTAPK 271


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +3

Query: 48  QSWPRRTGMTT*PRQAAWLWKPCLYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLKR 227
           ++WP  T + T   +A W W    Y    TFL        ++  C  ++   R T+P K 
Sbjct: 706 EAWPEPTPLITSALRADWTWLGRRYGLATTFLI-------ISLWCLFILAKDRRTYPRKL 758

Query: 228 ST--QNIYLIQWQVCTQA 275
                N+ L+   +C  A
Sbjct: 759 HALFMNLLLLFVSICRAA 776


>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 268 VHTCH*MR*IFCVLLFNGNVVLQRHIRDLH 179
           V + H +  IFC  LF+G  +L+RH+   H
Sbjct: 396 VSSNHDLSCIFCRKLFHGKSLLERHVSKRH 425


>SB_25791| Best HMM Match : GASA (HMM E-Value=9.9)
          Length = 234

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 347 PLFRPCIIREFEWRSTMVHWA 285
           PL R CII  F W S++ +W+
Sbjct: 150 PLGRLCIISTFTWTSSLQNWS 170


>SB_22785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 428 VLVTAIINSGPREDSTRDRSCGYSS 502
           V +TAI+N     +STR RSCG S+
Sbjct: 103 VNLTAILNLDYSTESTRGRSCGLSA 127


>SB_22509| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 752

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 390 NYSLVNWRKPSGKYS*LPLST 452
           NYS+VN+RK  GKY+ L + +
Sbjct: 454 NYSIVNFRKVDGKYTYLKVGS 474


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,692,147
Number of Sequences: 59808
Number of extensions: 420542
Number of successful extensions: 1043
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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