Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30210
(584 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5 pr... 108 1e-23
BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5 pr... 108 1e-23
AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5 va... 108 1e-23
AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5 pr... 108 1e-23
U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5 prot... 104 3e-22
AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5 va... 83 5e-16
AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein pr... 32 1.7
M83664-1|AAA59837.1| 258|Homo sapiens HLA-DPB1 protein. 29 9.1
M28200-1|AAA53195.1| 258|Homo sapiens MHC class II lymphocyte a... 29 9.1
BT019780-1|AAV38583.1| 258|Homo sapiens major histocompatibilit... 29 9.1
BC117701-1|AAI17702.1| 1989|Homo sapiens exophilin 5 protein. 29 9.1
BC113119-1|AAI13120.1| 1989|Homo sapiens exophilin 5 protein. 29 9.1
BC013184-1|AAH13184.1| 258|Homo sapiens HLA-DPB1 protein protein. 29 9.1
AY804143-1|AAW78748.1| 258|Homo sapiens MHC class II antigen pr... 29 9.1
AY804133-1|AAW78738.1| 258|Homo sapiens MHC class II antigen pr... 29 9.1
AY099469-1|AAM44402.1| 1989|Homo sapiens exophilin 5 protein. 29 9.1
AB014524-1|BAA31599.1| 1983|Homo sapiens KIAA0624 protein protein. 29 9.1
>BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 108 bits (260), Expect = 1e-23
Identities = 50/57 (87%), Positives = 53/57 (92%)
Frame = +1
Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
+GRYA KRFRKAQC IVER +NS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPL
Sbjct: 53 AGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPL 109
Score = 91.1 bits (216), Expect = 3e-18
Identities = 52/119 (43%), Positives = 64/119 (53%)
Frame = +2
Query: 122 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSVSVKPSAPS 301
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHS K P
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 302 WSAIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGPREDSTR 478
+ K + ++ + QVLV AIINSGPREDSTR
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTR 127
Score = 35.9 bits (79), Expect = 0.11
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3
Query: 480 IGRAGTVRRQPVDCFTLAPEFNQSQSGLLCTGAR 581
IGRAGTVRRQ VD L NQ+ LLCTGAR
Sbjct: 128 IGRAGTVRRQAVDVSPLR-RVNQA-IWLLCTGAR 159
>BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 108 bits (260), Expect = 1e-23
Identities = 50/57 (87%), Positives = 53/57 (92%)
Frame = +1
Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
+GRYA KRFRKAQC IVER +NS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPL
Sbjct: 53 AGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPL 109
Score = 91.1 bits (216), Expect = 3e-18
Identities = 52/119 (43%), Positives = 64/119 (53%)
Frame = +2
Query: 122 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSVSVKPSAPS 301
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHS K P
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 302 WSAIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGPREDSTR 478
+ K + ++ + QVLV AIINSGPREDSTR
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTR 127
Score = 35.9 bits (79), Expect = 0.11
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3
Query: 480 IGRAGTVRRQPVDCFTLAPEFNQSQSGLLCTGAR 581
IGRAGTVRRQ VD L NQ+ LLCTGAR
Sbjct: 128 IGRAGTVRRQAVDVSPLR-RVNQA-IWLLCTGAR 159
>AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5
variant protein.
Length = 204
Score = 108 bits (260), Expect = 1e-23
Identities = 50/57 (87%), Positives = 53/57 (92%)
Frame = +1
Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
+GRYA KRFRKAQC IVER +NS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPL
Sbjct: 53 AGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPL 109
Score = 91.1 bits (216), Expect = 3e-18
Identities = 52/119 (43%), Positives = 64/119 (53%)
Frame = +2
Query: 122 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSVSVKPSAPS 301
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHS K P
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 302 WSAIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGPREDSTR 478
+ K + ++ + QVLV AIINSGPREDSTR
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTR 127
Score = 35.9 bits (79), Expect = 0.11
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3
Query: 480 IGRAGTVRRQPVDCFTLAPEFNQSQSGLLCTGAR 581
IGRAGTVRRQ VD L NQ+ LLCTGAR
Sbjct: 128 IGRAGTVRRQAVDVSPLR-RVNQA-IWLLCTGAR 159
>AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 108 bits (260), Expect = 1e-23
Identities = 50/57 (87%), Positives = 53/57 (92%)
Frame = +1
Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
+GRYA KRFRKAQC IVER +NS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPL
Sbjct: 53 AGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPL 109
Score = 91.1 bits (216), Expect = 3e-18
Identities = 52/119 (43%), Positives = 64/119 (53%)
Frame = +2
Query: 122 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSVSVKPSAPS 301
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHS K P
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 302 WSAIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGPREDSTR 478
+ K + ++ + QVLV AIINSGPREDSTR
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTR 127
Score = 35.9 bits (79), Expect = 0.11
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3
Query: 480 IGRAGTVRRQPVDCFTLAPEFNQSQSGLLCTGAR 581
IGRAGTVRRQ VD L NQ+ LLCTGAR
Sbjct: 128 IGRAGTVRRQAVDVSPLR-RVNQA-IWLLCTGAR 159
>U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 104 bits (249), Expect = 3e-22
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = +1
Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
+GRYA FRKAQC IVER +NS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPL
Sbjct: 53 AGRYAANAFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPL 109
Score = 92.7 bits (220), Expect = 9e-19
Identities = 52/119 (43%), Positives = 65/119 (54%)
Frame = +2
Query: 122 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSVSVKPSAPS 301
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHS + K P
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANAFRKAQCPI 68
Query: 302 WSAIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGPREDSTR 478
+ K + ++ + QVLV AIINSGPREDSTR
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTR 127
Score = 35.9 bits (79), Expect = 0.11
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3
Query: 480 IGRAGTVRRQPVDCFTLAPEFNQSQSGLLCTGAR 581
IGRAGTVRRQ VD L NQ+ LLCTGAR
Sbjct: 128 IGRAGTVRRQAVDVSPLR-RVNQA-IWLLCTGAR 159
>AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5
variant protein.
Length = 107
Score = 83.4 bits (197), Expect = 5e-16
Identities = 42/59 (71%), Positives = 44/59 (74%)
Frame = +1
Query: 286 AQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLASTRDCHYQLWTP 462
AQC IVER +NS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGE L L TP
Sbjct: 1 AQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGEVGLCGLVRAGCALSTP 59
>AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein
protein.
Length = 1640
Score = 31.9 bits (69), Expect = 1.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 349 CHCSDRASLESLNGAPRWCTGLYGNACVHTC 257
C C + ++ E G R G YG AC H C
Sbjct: 1423 CSCHNNSTCEPATGTCRCGPGFYGQACEHPC 1453
>M83664-1|AAA59837.1| 258|Homo sapiens HLA-DPB1 protein.
Length = 258
Score = 29.5 bits (63), Expect = 9.1
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 80 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSV 256
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++ S
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF--DSD 70
Query: 257 AGMHTSVSV--KPSAPSWSA 310
G +V+ +P+A W++
Sbjct: 71 VGEFRAVTELGRPAAEYWNS 90
>M28200-1|AAA53195.1| 258|Homo sapiens MHC class II lymphocyte
antigen beta chain protein.
Length = 258
Score = 29.5 bits (63), Expect = 9.1
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 80 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSV 256
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++ S
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF--DSD 70
Query: 257 AGMHTSVSV--KPSAPSWSA 310
G +V+ +P+A W++
Sbjct: 71 VGEFRAVTELGRPAAEYWNS 90
>BT019780-1|AAV38583.1| 258|Homo sapiens major histocompatibility
complex, class II, DP beta 1 protein.
Length = 258
Score = 29.5 bits (63), Expect = 9.1
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 80 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSV 256
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++ S
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF--DSD 70
Query: 257 AGMHTSVSV--KPSAPSWSA 310
G +V+ +P+A W++
Sbjct: 71 VGEFRAVTELGRPAAEYWNS 90
>BC117701-1|AAI17702.1| 1989|Homo sapiens exophilin 5 protein.
Length = 1989
Score = 29.5 bits (63), Expect = 9.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 292 CTIVERHSNSLMMHGRNNGKKLMAVRI 372
CT+ R S+S ++HGR +G K+MA +
Sbjct: 1020 CTL-PRKSSSFLIHGRQSGSKIMAASL 1045
>BC113119-1|AAI13120.1| 1989|Homo sapiens exophilin 5 protein.
Length = 1989
Score = 29.5 bits (63), Expect = 9.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 292 CTIVERHSNSLMMHGRNNGKKLMAVRI 372
CT+ R S+S ++HGR +G K+MA +
Sbjct: 1020 CTL-PRKSSSFLIHGRQSGSKIMAASL 1045
>BC013184-1|AAH13184.1| 258|Homo sapiens HLA-DPB1 protein protein.
Length = 258
Score = 29.5 bits (63), Expect = 9.1
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 80 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSV 256
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++ S
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF--DSD 70
Query: 257 AGMHTSVSV--KPSAPSWSA 310
G +V+ +P+A W++
Sbjct: 71 VGEFRAVTELGRPAAEYWNS 90
>AY804143-1|AAW78748.1| 258|Homo sapiens MHC class II antigen
protein.
Length = 258
Score = 29.5 bits (63), Expect = 9.1
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 80 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSV 256
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++ S
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF--DSD 70
Query: 257 AGMHTSVSV--KPSAPSWSA 310
G +V+ +P+A W++
Sbjct: 71 VGEFRAVTELGRPAAEYWNS 90
>AY804133-1|AAW78738.1| 258|Homo sapiens MHC class II antigen
protein.
Length = 258
Score = 29.5 bits (63), Expect = 9.1
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 80 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSV 256
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++ S
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF--DSD 70
Query: 257 AGMHTSVSV--KPSAPSWSA 310
G +V+ +P+A W++
Sbjct: 71 VGEFRAVTELGRPAAEYWNS 90
>AY099469-1|AAM44402.1| 1989|Homo sapiens exophilin 5 protein.
Length = 1989
Score = 29.5 bits (63), Expect = 9.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 292 CTIVERHSNSLMMHGRNNGKKLMAVRI 372
CT+ R S+S ++HGR +G K+MA +
Sbjct: 1020 CTL-PRKSSSFLIHGRQSGSKIMAASL 1045
>AB014524-1|BAA31599.1| 1983|Homo sapiens KIAA0624 protein protein.
Length = 1983
Score = 29.5 bits (63), Expect = 9.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 292 CTIVERHSNSLMMHGRNNGKKLMAVRI 372
CT+ R S+S ++HGR +G K+MA +
Sbjct: 1014 CTL-PRKSSSFLIHGRQSGSKIMAASL 1039
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,520,984
Number of Sequences: 237096
Number of extensions: 1931173
Number of successful extensions: 3844
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3844
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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