Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30210
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...    98   4e-21
AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 45/57 (78%), Positives = 51/57 (89%)
 Frame = +1

Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
           +GR+  +RFRKA C IVER +NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+
Sbjct: 59  AGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPV 115



 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 47/117 (40%), Positives = 58/117 (49%)
 Frame = +2

Query: 128 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSVAGMHTSVSVKPSAPSWS 307
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHS          K + P   
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVE 76

Query: 308 AIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGPREDSTR 478
            +            K      +     ++      +   QVLV A+INSGPREDSTR
Sbjct: 77  RLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTR 133



 Score = 35.9 bits (79), Expect = 0.021
 Identities = 22/34 (64%), Positives = 23/34 (67%)
 Frame = +3

Query: 480 IGRAGTVRRQPVDCFTLAPEFNQSQSGLLCTGAR 581
           IGRAGTVRRQ VD   L    NQ+   LLCTGAR
Sbjct: 134 IGRAGTVRRQAVDVAPLR-RVNQA-IWLLCTGAR 165


>AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical
           protein Y38F1A.6 protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 373 QYVRPSVFCHCSDRASLESLNGAPRWCTGLYGNACVHTCH 254
           +Y R S+F    + A  E L  +     G +GNA VH CH
Sbjct: 289 KYFRRSIFDPTDEEARTEMLKASSFAGIG-FGNAGVHLCH 327


>Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical
           protein M88.1 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 565 KSPDWLWLNSGA 530
           K P W+WLNSGA
Sbjct: 159 KIPSWVWLNSGA 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,295,055
Number of Sequences: 27780
Number of extensions: 309516
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)