Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30210
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.9  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   5.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 523 SPLRRSSTKANLGFCAQV 576
           +PL  S ++AN GFCA +
Sbjct: 151 NPLDDSISQANEGFCAVI 168


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 523 SPLRRSSTKANLGFCAQV 576
           +PL  S ++AN GFCA +
Sbjct: 146 NPLDDSISQANEGFCAVI 163


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 118 FTTSRRHS*NQAFRQMELLRCASL*YVSAGLHFR*REVRKIFTSFSGRYAHKRFRKAQ 291
           FTT +  S  + FR+ + L  A     S+ LH    +V+  F   + R   KR ++A+
Sbjct: 16  FTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQ--NRRAKAKRLQEAE 71


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 200 ETYQRLAHRSNSICRKA*FQECRRLVVKTWFP 105
           + Y+RL H  N I ++  F    RL   T+ P
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHNDRLGFLTFCP 271


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 29  FSNRKVPIMAEENWN 73
           F N+K+P+   E W+
Sbjct: 550 FKNKKLPVFLAEIWD 564


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,406
Number of Sequences: 438
Number of extensions: 3620
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)