Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30210
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...    99   2e-21
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...    99   2e-21
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...    99   2e-21
At5g07920.1 68418.m00916 diacylglycerol kinase 1 (DGK1) identica...    28   4.0  
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote...    27   7.0  
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    27   7.0  
At5g35460.1 68418.m04217 expressed protein                             27   9.2  

>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 46/57 (80%), Positives = 51/57 (89%)
 Frame = +1

Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
           +GRY+ KRFRKAQC IVER +NSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+
Sbjct: 56  AGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPI 112



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
 Frame = +2

Query: 125 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSVAGMHTSVSVKPSAPS 301
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+          K   P 
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 302 WSAIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGPREDSTRD 481
              +            K      +    +++     +    QV++ AI+NSGPRED+TR 
Sbjct: 72  VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131

Query: 482 RSCG 493
            S G
Sbjct: 132 GSAG 135


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 46/57 (80%), Positives = 51/57 (89%)
 Frame = +1

Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
           +GRY+ KRFRKAQC IVER +NSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+
Sbjct: 56  AGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPI 112



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
 Frame = +2

Query: 125 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSVAGMHTSVSVKPSAPS 301
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+          K   P 
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 302 WSAIQTL**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGPREDSTRD 481
              +            K      +    +++     +    QV++ AI+NSGPRED+TR 
Sbjct: 72  VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131

Query: 482 RSCG 493
            S G
Sbjct: 132 GSAG 135


>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 46/57 (80%), Positives = 51/57 (89%)
 Frame = +1

Query: 253 SGRYAHKRFRKAQCTIVERHSNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 423
           +GRY+ KRFRKAQC IVER +NSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+
Sbjct: 56  AGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPI 112



 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
 Frame = +2

Query: 143 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSVAGMHTSVSVKPSAPSWSAIQT 319
           E+KLF RWS  DV V+D+SL DYI V+  K+A ++PH+          K   P    +  
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 320 L**CTVGTMAKN*WPYVLSNMRLKLFTC*LEKTLWQVLVTAIINSGPREDSTRDRSCG 493
                     K      +    +++     +    QV++ AI+NSGPRED+TR  S G
Sbjct: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAG 135


>At5g07920.1 68418.m00916 diacylglycerol kinase 1 (DGK1) identical
           to diacylglycerol kinase 1 (Diglyceride kinase 1, DGK 1,
           DAG kinase 1) [Arabidopsis thaliana] SWISS-PROT:Q39017
          Length = 728

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 358 SVFC-HCSDRASLESLNGAPRWCTGLYGNACVHT-CH 254
           S FC +C +  S   L G+P WC  L+    VH  CH
Sbjct: 166 SSFCSYCDESCSSSFLGGSPIWCC-LWCQRLVHVDCH 201


>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
           low similarity to SP|P24640|LIP3_MORSP Lipase 3
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Moraxella sp}; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 328

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 120 YHKPPTFLKSSFSADGVATMCKSLI 194
           ++KPP ++ S F+ D +  MCK  +
Sbjct: 191 FYKPPIWIPSCFAMDYIHVMCKDYL 215


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 96  AWLWKPCLYHKPPTFLKSSFSA 161
           +W W  CL+  P   LKS+ SA
Sbjct: 426 SWAWLTCLFFMPEMLLKSASSA 447


>At5g35460.1 68418.m04217 expressed protein
          Length = 381

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 335 VGTMAKN*WPYVLSNMRLK--LFTC*LEK-TLWQVLVTAIINSGPREDSTRD 481
           VGT  +  WPYV     L   LF   L   TLWQVL   I+N   R+   RD
Sbjct: 204 VGTDRRVSWPYVEDKAYLFTWLFLVPLVVYTLWQVLYFLIVNVLRRQRLLRD 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,435,263
Number of Sequences: 28952
Number of extensions: 289921
Number of successful extensions: 687
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)