Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30208
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.8  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   6.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 131 PSRHYRSGLR 102
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 635  HQPPHKPLSTLT 670
            H PPH P  TLT
Sbjct: 1364 HAPPHSPQITLT 1375


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 547 TGKKSKLEFAIYPAPQVSTAVVEP 618
           +GKKSK   A+  A Q S+ V  P
Sbjct: 371 SGKKSKFNAAVAAAVQSSSIVSSP 394


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 194 RWSCLWASGHQAGCRAPGSKAPSRHYR 114
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 194 RWSCLWASGHQAGCRAPGSKAPSRHYR 114
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 194 RWSCLWASGHQAGCRAPGSKAPSRHYR 114
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 165 MARCPQTRPSGVETILSTLSSARPE 239
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,346
Number of Sequences: 438
Number of extensions: 4545
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)