Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30207
(550 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 156 3e-37
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 130 2e-29
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 99 6e-20
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 95 7e-19
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 81 2e-14
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 72 8e-12
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 65 9e-10
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 64 3e-09
UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ... 62 8e-09
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 62 8e-09
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 61 1e-08
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 54 3e-06
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 52 1e-05
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 49 8e-05
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 46 8e-04
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 43 0.005
UniRef50_Q23TC4 Cluster: Putative uncharacterized protein; n=1; ... 34 2.5
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 33 5.8
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 156 bits (379), Expect = 3e-37
Identities = 74/94 (78%), Positives = 84/94 (89%)
Frame = +2
Query: 5 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 184
RLD +FGSWKTPSK+KKNFNLPQPKMANTDL+RLLKS+EIR+VLRAP KRV+RATRKLNP
Sbjct: 124 RLDAIFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRRVLRAPIKRVVRATRKLNP 183
Query: 185 LTNNKAMLKLNPYAAVLKRKAILGCAEGRT*RLL 286
LTN KAMLKLNPYAAVLK+KA+L + + R L
Sbjct: 184 LTNTKAMLKLNPYAAVLKKKAVLDQVKRKNKRAL 217
Score = 35.1 bits (77), Expect = 1.1
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1
Query: 292 AEKSGLKLSKRNPAMKAEKLRERRRKNI 375
AEK G+KL +PA+KA KL+E+R K+I
Sbjct: 220 AEKRGIKLPDDDPAVKALKLKEKRAKSI 247
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 130 bits (314), Expect = 2e-29
Identities = 63/90 (70%), Positives = 74/90 (82%)
Frame = +2
Query: 5 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 184
RL+ LFG+WK PS KK +NLPQPKMANTDL+RLLKS+EIRKVLR P KRV R+ R+LNP
Sbjct: 262 RLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNP 321
Query: 185 LTNNKAMLKLNPYAAVLKRKAILGCAEGRT 274
LTN + ++KLNPYA VLKR+A L AE RT
Sbjct: 322 LTNVRQLIKLNPYAEVLKRRAAL-AAEKRT 350
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 99.1 bits (236), Expect = 6e-20
Identities = 44/83 (53%), Positives = 59/83 (71%)
Frame = +2
Query: 5 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 184
+LD L+G+W+ + K N+NLP KM NTDL+R+LKS EI++ LRAP K++ R K NP
Sbjct: 259 KLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNP 318
Query: 185 LTNNKAMLKLNPYAAVLKRKAIL 253
L N + MLKLNPYA ++R IL
Sbjct: 319 LKNLRIMLKLNPYAKTMRRNTIL 341
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 95.5 bits (227), Expect = 7e-19
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = +2
Query: 5 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 184
+LD L+G+W + K N+NLP KM NTDL+R+LKS EI++ L+AP K++ R K NP
Sbjct: 98 KLDDLYGTWHKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALQAPRKKIHRRVLKKNP 157
Query: 185 LTNNKAMLKLNPYAAVLKRKAILGCAEGRT*RL 283
L N MLKLNPYA ++R IL A+ R+
Sbjct: 158 LKNLGIMLKLNPYAKTMRRNTILRQAKNHKLRM 190
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 80.6 bits (190), Expect = 2e-14
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +2
Query: 5 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRV-IRATRKLN 181
+LD L+G+W + K N+NLP KM NTDL+R+LK I++ LRAP KR+ R +K N
Sbjct: 176 KLDDLYGTWPKAASLKSNYNLPMHKMLNTDLSRILKRPGIQRALRAPRKRIHRRVLKKKN 235
Query: 182 PLTNNKAMLKLNP 220
PL N + MLKLNP
Sbjct: 236 PLKNLRLMLKLNP 248
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 72.1 bits (169), Expect = 8e-12
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 5 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR--ATRKL 178
+LD +FG+ + S KK + P MA TDLTRL+ SDEI+ L AP IR A K
Sbjct: 262 KLDSIFGTSTSKSASKKGWKPPTNIMAQTDLTRLINSDEIQSALNAPKLGAIRAHAPLKR 321
Query: 179 NPLTNNKAMLKLNPYAAVLK 238
NPL N AM KLNPYA V +
Sbjct: 322 NPLKNKSAMDKLNPYAKVAR 341
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 65.3 bits (152), Expect = 9e-10
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Frame = +2
Query: 2 GRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLR-----APNKRVIRA 166
G LD ++GS PS KK+F LP M DL++++ S +I+KVLR A +KR +
Sbjct: 240 GALDTIYGSTTEPSALKKDFLLPSTMMKQPDLSKIINSSDIQKVLRPVRGGAVSKRGV-- 297
Query: 167 TRKLNPLTNNKAMLKLNPYAAVLKRKAI 250
+K NPL N + L+LNPYAA ++ +
Sbjct: 298 VQKKNPLKNFQVQLRLNPYAATFSKEKL 325
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 63.7 bits (148), Expect = 3e-09
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +2
Query: 8 LDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIR-KVLRAPNKRVIRATRKLNP 184
LD LFG+++ S K + L +P + N DL R++ S++++ KV A +V+ +K NP
Sbjct: 262 LDKLFGTYRYASVLKDGYQLLRPLLTNPDLARIINSNQVQEKVQPAKTTKVLHDVQKKNP 321
Query: 185 LTNNKAMLKLNPYAAVLKRKAI 250
L N KAM +LNPYA + A+
Sbjct: 322 LKNTKAMDRLNPYAKKQRAAAV 343
>UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal
protein L4; n=3; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L4 - Rattus norvegicus
Length = 140
Score = 62.1 bits (144), Expect = 8e-09
Identities = 34/75 (45%), Positives = 46/75 (61%)
Frame = +2
Query: 77 KMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILG 256
KM N+DL+R+LK EI++ L+AP K + K NPLTN + MLKLNP A + R IL
Sbjct: 3 KMMNSDLSRILKIPEIQRALQAPCKEIQHRVSKKNPLTNLRIMLKLNPDAKTMHRNTIL- 61
Query: 257 CAEGRT*RLLLMPRR 301
E R +L + R+
Sbjct: 62 -PEARNHKLQVKSRK 75
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 62.1 bits (144), Expect = 8e-09
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Frame = +2
Query: 8 LDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVI--RA-TRKL 178
LD ++G+ PS KK+F LP ++ D+ RL+ S E++ V+RA + RA +K
Sbjct: 265 LDNIYGTTTAPSALKKDFLLPSNVVSQADIGRLINSSELQSVIRAAKGSALTKRAGVQKK 324
Query: 179 NPLTNNKAMLKLNPYAAVLKRKAI 250
NPL N + +L+LNPYAA ++ I
Sbjct: 325 NPLLNKQVLLRLNPYAAGYSKEKI 348
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 61.3 bits (142), Expect = 1e-08
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +2
Query: 8 LDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIR-KVLRAPNKRVIRATRKLNP 184
LD LFG+++ S K + L +P + N DL R++ S++++ KV A V+ +K NP
Sbjct: 108 LDKLFGTYRYSSILKDGYQLLRPLLTNPDLARIINSNQVQEKVQAAKQTTVLHEVQKKNP 167
Query: 185 LTNNKAMLKLNPYA 226
L N+KA+ +LNPYA
Sbjct: 168 LKNSKALDRLNPYA 181
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 53.6 bits (123), Expect = 3e-06
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 5 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVI-RATRKLN 181
+L+ +FG+ K ++ K F + +MA D+ R++ + E K+LRA K V+ + ++ N
Sbjct: 261 KLNTIFGTQKKMAQGKSGFRIAHAQMAVPDMKRVVVAAEKAKLLRA--KIVLPKVPKRAN 318
Query: 182 PLTNNKAMLKLNPYAAVLKRK 244
PL N AM+KLNPYA + K
Sbjct: 319 PLKNWAAMVKLNPYAKIASHK 339
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 51.6 bits (118), Expect = 1e-05
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Frame = +2
Query: 5 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-----KRVIRAT 169
RL ++GS+ S K + LP+P M N D+TR++ S E++ VLR + R+
Sbjct: 262 RLQEIYGSYTHGSSSKVGYTLPRPAMTNADITRIINSTEVQSVLRPLRGFRCMGSMGRSK 321
Query: 170 RKLNPLTNNKAMLKLNPYAAVLKRKAILGCAEG 268
K N LTN LNP L++ A L G
Sbjct: 322 TKKNNLTNLTKRACLNPAYTSLRKSARLAQIPG 354
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 48.8 bits (111), Expect = 8e-05
Identities = 25/82 (30%), Positives = 43/82 (52%)
Frame = +2
Query: 5 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 184
+LD ++G KKN+ LP+P + N D+ R++ SD+++ L + T+ N
Sbjct: 259 KLDVIYGKTFQKYVTKKNYILPKPIVNNADIYRIINSDQVQASLLDKKSPCKKRTQNKNS 318
Query: 185 LTNNKAMLKLNPYAAVLKRKAI 250
LTN +LNP +L+ A+
Sbjct: 319 LTNFAVRCRLNPAYKLLRALAV 340
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 45.6 bits (103), Expect = 8e-04
Identities = 19/64 (29%), Positives = 40/64 (62%)
Frame = +2
Query: 50 KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAA 229
K+N+ LP+ + TD+ R+L+SD ++K P + + RK++P ++ +A+ +L+P
Sbjct: 254 KQNYTLPRSCITQTDIERILQSDAVQKTF-VPKRDPLVIERKVDPFSSKEALARLDPSGT 312
Query: 230 VLKR 241
V+ +
Sbjct: 313 VMPK 316
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 42.7 bits (96), Expect = 0.005
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Frame = +2
Query: 5 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA---PNKRVIRATRK 175
+LD L+G+ + K + P P + NTDL+R++ S ++ VL+A +K++I R
Sbjct: 259 KLDKLYGTRFRTALLKNEYKHPTPSVTNTDLSRIIHSPTVQSVLKARGKQSKKIINVRRN 318
Query: 176 L---NPLTNNKAMLK 211
L + L+ N A +K
Sbjct: 319 LLIASKLSQNNARIK 333
>UniRef50_Q23TC4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 966
Score = 33.9 bits (74), Expect = 2.5
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +2
Query: 71 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 250
Q K AN + RLL S+ + ++P+ ++ KLNP++ N + L LN + L +K++
Sbjct: 330 QHKRANIQV-RLLSSEISKNQSQSPSNNILNQQNKLNPISTNTSQL-LNKQISQLNQKSL 387
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 32.7 bits (71), Expect = 5.8
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 65 LPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRK 175
+P + N DL+ L++S ++ LRAP + +ATRK
Sbjct: 261 MPTKLLKNADLSALIESTPVQAALRAPREGTPKATRK 297
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,867,750
Number of Sequences: 1657284
Number of extensions: 6622563
Number of successful extensions: 17512
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17504
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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