Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30207
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    69   5e-13
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    68   8e-13
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.0  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   5.6  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    25   7.3  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   7.3  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   9.7  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   9.7  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 68.9 bits (161), Expect = 5e-13
 Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
 Frame = +2

Query: 2   GRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRK 175
           G LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K
Sbjct: 258 GLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQK 317

Query: 176 LNPLTNNKAMLKLNPYAAVLK 238
            NPL N   + +LNPYA   K
Sbjct: 318 KNPLKNKAVLARLNPYAKAYK 338


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 68.1 bits (159), Expect = 8e-13
 Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
 Frame = +2

Query: 2   GRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRK 175
           G LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K
Sbjct: 258 GLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQK 317

Query: 176 LNPLTNNKAMLKLNPYAAVLK 238
            NPL N   + +LNPYA   K
Sbjct: 318 KNPLKNKAVLSRLNPYAKAYK 338


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 44  KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 220
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 226 RVRIEFQHRLVISEWVQFACSTDHAFVGSTEDLPDLIRL 110
           + ++ F H L + +WV+ +       +G   + PD +RL
Sbjct: 171 KYKVLFYHSLNLRDWVKLSEFGSAGVLGYQYECPDFVRL 209


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 27  HGRHHQNKRRTSTCPNRRW 83
           HG H       S CPN RW
Sbjct: 378 HGGHTNRISEFSWCPNERW 396


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +2

Query: 5   RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 181
           RL+    +W     ++    +PQ K  +    + LK DEIR+        V+  + +LN
Sbjct: 259 RLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELN 317


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 26  SWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPL 187
           S+++  KQKK  +  + + +  ++ RL +  E+R  +   NK+ +    KL  L
Sbjct: 169 SFQSRLKQKKQRS--EFRASKREMERLERDQELRNKIEERNKKELETIEKLREL 220


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 196 VISEWVQFACSTDHAFVGSTEDLPDLIRL 110
           V+S+W+Q         + ++E LPD++ +
Sbjct: 231 VVSQWIQRLSQLQGQKIDNSESLPDILSI 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,790
Number of Sequences: 5004
Number of extensions: 26253
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)