Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30207
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           85   4e-17
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    84   6e-17

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 38/83 (45%), Positives = 58/83 (69%)
 Frame = +2

Query: 5   RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 184
           +L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++  NK V R  ++ NP
Sbjct: 264 KLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNP 323

Query: 185 LTNNKAMLKLNPYAAVLKRKAIL 253
           L N  A+LKLNPY    ++ A L
Sbjct: 324 LKNVAAVLKLNPYFGTARKMATL 346


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 39/83 (46%), Positives = 56/83 (67%)
 Frame = +2

Query: 5   RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 184
           +LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++  NK V     + NP
Sbjct: 263 KLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNP 322

Query: 185 LTNNKAMLKLNPYAAVLKRKAIL 253
           L N  A+LKLNPY    ++ A L
Sbjct: 323 LKNVAAVLKLNPYFGTARKMAAL 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,197,142
Number of Sequences: 37544
Number of extensions: 189234
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)