Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30207
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    85   4e-17
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    79   3e-15
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami...    28   4.7  
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat...    27   6.2  
At3g27150.1 68416.m03396 kelch repeat-containing F-box family pr...    27   8.3  
At1g50520.1 68414.m05667 cytochrome P450 family protein similar ...    27   8.3  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 40/87 (45%), Positives = 57/87 (65%)
 Frame = +2

Query: 5   RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 184
           +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDEI+ V+    K   RA  K NP
Sbjct: 265 KLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNP 324

Query: 185 LTNNKAMLKLNPYAAVLKRKAILGCAE 265
           L N   MLKLNPYA   KR ++L  A+
Sbjct: 325 LKNLNVMLKLNPYAKTAKRMSLLAEAQ 351


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 36/83 (43%), Positives = 53/83 (63%)
 Frame = +2

Query: 5   RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 184
           +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDE++ V+        RA  K NP
Sbjct: 266 KLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNP 325

Query: 185 LTNNKAMLKLNPYAAVLKRKAIL 253
           L N   M KLNPYA   KR ++L
Sbjct: 326 LKNLNVMFKLNPYAKTAKRMSLL 348


>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
           protein (FBX1) E3 ubiquitin ligase SCF complex F-box
           subunit; almost identical to unusual floral organs
           (UFO)GI:4376159 from [Arabidopsis thaliana]
           Landsberg-erecta; one amino acid difference
          Length = 442

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 475 RPFQLSASYLPSSWEEAGSS*QPASWVS 392
           R ++LS +Y+PS +  +GSS    SWVS
Sbjct: 138 RWYRLSFAYIPSGFYPSGSSGGLVSWVS 165


>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK18) mitogen-activated protein
           kinase (MAPK)(AtMPK18), PMID:12119167
          Length = 603

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 89  TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 250
           TDL    KS+ I  V     ++ +   RK NP+T ++   K +P A  L ++ +
Sbjct: 232 TDLLGTPKSETISGVRNDKARKYLTEMRKKNPVTFSQKFSKADPLALRLLQRLL 285


>At3g27150.1 68416.m03396 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 422

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 77  KMANTDLTRLLKSDEIRKVLR 139
           K+ N   +RLLKSDEI KV R
Sbjct: 95  KLLNKGFSRLLKSDEIFKVRR 115


>At1g50520.1 68414.m05667 cytochrome P450 family protein similar to
           CYTOCHROME P450 93A3 GB:O81973 from [Glycine max]
          Length = 533

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
 Frame = +2

Query: 95  LTRLLKSDEIRKVLRAPNKRVIRATR-----KLNPLTNNKAMLK----LNPYAAVLKRKA 247
           +  L+   EI K+LR   + V+  TR      L+ L   +A++K    L+P++ +L R A
Sbjct: 327 MAELINHPEILKILREEIESVVGTTRFIQETDLSNLPYLQAVMKEGQRLHPHSPMLVRNA 386

Query: 248 ILGCAEG 268
             GC  G
Sbjct: 387 TKGCKIG 393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,898,983
Number of Sequences: 28952
Number of extensions: 147879
Number of successful extensions: 408
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)