Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30206
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...   165   3e-43
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    25   0.45 
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    25   0.45 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   2.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.4  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   7.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.8  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score =  165 bits (401), Expect = 3e-43
 Identities = 88/128 (68%), Positives = 101/128 (78%), Gaps = 4/128 (3%)
 Frame = +1

Query: 256 SLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEAL 435
           SLT+PS+LDSGKELYIKIIPNKN+GTLTIIDTGIGMTKADLV+NLGTIAKSGTKAFMEAL
Sbjct: 56  SLTNPSRLDSGKELYIKIIPNKNDGTLTIIDTGIGMTKADLVHNLGTIAKSGTKAFMEAL 115

Query: 436 QAGADISMIGQFGVGFYSSYLVADP*LFTLNTMTTSNTCGNLLQEARSQSAQTAV----S 603
           QAGADISMIGQFGVGFYS+YLVAD     +  ++ +N     + E+ +  + T       
Sbjct: 116 QAGADISMIGQFGVGFYSAYLVAD----KVTVVSKNNDDEQYVWESSAGGSFTVTQDRGE 171

Query: 604 PLVEGTKI 627
           PL  GTKI
Sbjct: 172 PLGRGTKI 179



 Score = 97.9 bits (233), Expect = 7e-23
 Identities = 50/57 (87%), Positives = 52/57 (91%)
 Frame = +2

Query: 86  MPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYD 256
           MPEE   Q  +VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRY+
Sbjct: 1   MPEE--NQNGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYE 55


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 124 FNLRWLCLHFFRHFLY-CFLFNSH-KMTRGFLTHVFQSAKY 8
           F  R+LCL F+ +F Y  +++ ++ +   G   ++ Q A Y
Sbjct: 75  FMSRFLCLPFYSYFFYLSYIYTTYSRKLSGIFKYIDQMAGY 115


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 124 FNLRWLCLHFFRHFLY-CFLFNSH-KMTRGFLTHVFQSAKY 8
           F  R+LCL F+ +F Y  +++ ++ +   G   ++ Q A Y
Sbjct: 31  FMSRFLCLPFYSYFFYLSYIYTTYSRKLSGIFKYIDQMAGY 71


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 385 CSPNRPWSYQYRYR 344
           C P RPW   Y +R
Sbjct: 522 CDPYRPWQTVYNHR 535


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 450 HQHDWTVRCWLLLQ 491
           HQH W    WLL Q
Sbjct: 215 HQHAWIWLVWLLSQ 228


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 450 HQHDWTVRCWLLLQ 491
           HQH W    WLL Q
Sbjct: 461 HQHAWIWLLWLLSQ 474


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 450 HQHDWTVRCWLLLQ 491
           HQH W    WLL Q
Sbjct: 461 HQHAWIWLLWLLSQ 474


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 450 HQHDWTVRCWLLLQ 491
           HQH W    WLL Q
Sbjct: 448 HQHAWIWLVWLLSQ 461


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 450 HQHDWTVRCWLLLQ 491
           HQH W    WLL Q
Sbjct: 448 HQHAWIWLVWLLSQ 461


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 450 HQHDWTVRCWLLLQ 491
           HQH W    WLL Q
Sbjct: 461 HQHAWIWLLWLLSQ 474


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 450 HQHDWTVRCWLLLQ 491
           HQH W    WLL Q
Sbjct: 461 HQHAWIWLLWLLSQ 474


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 576 FTVRPDSGEPLGRG 617
           FT+ PDSGE L  G
Sbjct: 233 FTLPPDSGEKLTLG 246


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 576 FTVRPDSGEPLGRG 617
           FT+ PDSGE L  G
Sbjct: 233 FTLPPDSGEKLTLG 246


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 576 FTVRPDSGEPLGRG 617
           FT+ PDSGE L  G
Sbjct: 233 FTLPPDSGEKLTLG 246


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 576 FTVRPDSGEPLGRG 617
           FT+ PDSGE L  G
Sbjct: 233 FTLPPDSGEKLTLG 246


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 576 FTVRPDSGEPLGRG 617
           FT+ PDSGE L  G
Sbjct: 233 FTLPPDSGEKLTLG 246


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -2

Query: 605 GLTAVWADCERASCRR 558
           G    W +C++A+C +
Sbjct: 881 GKPTCWRECDKATCEK 896


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 155 LMSLIINTFYSNKEIFLRELISNSSDALDKIRYDLSRIRQN 277
           +M  +I       E FL E  S  +       YDL R+R+N
Sbjct: 185 IMKNLICEIDGRHEFFLAEFKSAKTPPNKLNCYDLRRVRKN 225


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -3

Query: 385 CSPNRPWSYQYRYR 344
           C P  PW   Y YR
Sbjct: 481 CDPYTPWHTFYDYR 494


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,705
Number of Sequences: 336
Number of extensions: 3901
Number of successful extensions: 26
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)