Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30206
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    79   5e-15
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       71   9e-13
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       68   9e-12
SB_23993| Best HMM Match : SRCR (HMM E-Value=0.0036)                   31   1.2  
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)            29   2.8  
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        29   3.7  
SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)                   28   8.5  
SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)                     28   8.5  
SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)                   28   8.5  
SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)                    28   8.5  

>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 3/86 (3%)
 Frame = +1

Query: 259 LTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQ 438
           LT     ++   L I I  ++  GT TI D G+GMT+ +L+++LG IAKSG+K FME L+
Sbjct: 106 LTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFMEKLK 165

Query: 439 AGADIS---MIGQFGVGFYSSYLVAD 507
             A  S   +IGQFGVGFYS+++VAD
Sbjct: 166 NEARSSHENIIGQFGVGFYSTFMVAD 191



 Score = 35.9 bits (79), Expect = 0.032
 Identities = 16/61 (26%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
 Frame = +2

Query: 74  AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKIR 250
           +V+ + E  + +  E  +     ++ + + L++++  +   ++F+RE+ISN+SDAL+K+R
Sbjct: 43  SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVR 102

Query: 251 Y 253
           +
Sbjct: 103 H 103


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 30/38 (78%), Positives = 34/38 (89%)
 Frame = +3

Query: 510 VTVHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGRGYK 623
           V V +KHNDDEQY+WES+AGGSFTV+ DSGEPLGRG K
Sbjct: 84  VVVTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGRGTK 121



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 28/64 (43%), Positives = 34/64 (53%)
 Frame = +1

Query: 436 QAGADISMIGQFGVGFYSSYLVADP*LFTLNTMTTSNTCGNLLQEARSQSAQTAVSPLVE 615
           +AGADISMIGQFGVGFYS+YLVA+  + T                      + +  PL  
Sbjct: 59  KAGADISMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGR 118

Query: 616 GTKI 627
           GTKI
Sbjct: 119 GTKI 122


>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 33/52 (63%), Positives = 40/52 (76%)
 Frame = +2

Query: 95  EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 250
           +M+    + E   FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKIR
Sbjct: 68  QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKIR 119



 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 34/55 (61%), Positives = 39/55 (70%)
 Frame = +1

Query: 256 SLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKA 420
           SLTD +  DSG EL IKI  +K    L + DTGIGMTK +L+ NLGTIAKSGT A
Sbjct: 122 SLTDKTAFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNLGTIAKSGTIA 176



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +3

Query: 510 VTVHSKHNDDEQYVWESSAGGSFTVRPD-SGEPLGRG 617
           V V SK+NDD+QY+WES A  SF++  D  G  L RG
Sbjct: 179 VIVTSKNNDDKQYIWESDA-SSFSISEDPRGPTLKRG 214


>SB_23993| Best HMM Match : SRCR (HMM E-Value=0.0036)
          Length = 189

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +3

Query: 387 FGNHREIWY*SFHGGSSSRCRHQHDWTVRCWLLLQLLGR*PVTVHSKHNDDEQYVWESSA 566
           +G+ REI   +    +   C H  D TV+C +  +++ +   T     ND E     +  
Sbjct: 20  YGSEREIASCNRSNWAQPTCNHSRDVTVQCKIRPEMIPKSTPTDPRTRNDCEASPKSTPR 79

Query: 567 GGSFTVRPDSGEP--LGRGYKDSSF 635
             +  +  DSG+P  +G G+ +  F
Sbjct: 80  NYNHRLVDDSGDPTRVGAGFLEVLF 104


>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
          Length = 375

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +2

Query: 41  PSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 220
           PS   V    KA  K  +E ET+P E+   +F+ +   ++        S+  +FLR  I 
Sbjct: 71  PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123

Query: 221 NSSDALDKI 247
             SDA +KI
Sbjct: 124 LRSDASEKI 132


>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +1

Query: 271 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 441
           +K+  G+E+   +  ++NE     ++  +G ++ D++ N+G      T++ +E  +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +3

Query: 294 AVHQDHSQQERGHSYDHRYRYWYDQ----GRFGEQFGNHREIWY*SFHGGSSSRCRHQHD 461
           AV   H+   RGHS+      W       G F + FG+    W    + G+S  CR    
Sbjct: 150 AVGVPHAHSYRGHSFRRGATTWAFHLGIPGEFIQVFGD----WASDAYRGNSL-CRANCQ 204

Query: 462 WTVRCWLLLQ 491
           W +RC ++ Q
Sbjct: 205 WLIRCVVIFQ 214


>SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 289

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 136 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 14
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 136 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 14
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 136 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 14
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 479 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 517


>SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)
          Length = 306

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 136 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 14
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 412

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 136 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 14
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 246

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 136 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 14
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,200,040
Number of Sequences: 59808
Number of extensions: 521556
Number of successful extensions: 1419
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)