Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30204
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.1  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 698 FLWTSWPAVNSRKL 739
           FLW  WP+ NS  L
Sbjct: 219 FLWLFWPSFNSAAL 232


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 735 FREFTAGQDVHKNGFHCRTMXSHSQK 658
           FR+FT+  DV   G  C  + S+ ++
Sbjct: 812 FRKFTSASDVWSMGIVCWEVMSYGER 837


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 127 PSRHYRSGLR 98
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 190 RWSCLWASGHQAGCRAPGSKAPSRHYR 110
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 190 RWSCLWASGHQAGCRAPGSKAPSRHYR 110
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 190 RWSCLWASGHQAGCRAPGSKAPSRHYR 110
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 161 MARCPQTRPSGVETILSTLSSARPE 235
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 494 PPPKEWKIRNPC 459
           PPP++WK  + C
Sbjct: 416 PPPEDWKPLDKC 427


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/33 (24%), Positives = 12/33 (36%)
 Frame = +3

Query: 174 HRQDHRGWRRFFQHFLQRDRSWQARTPAVFVDL 272
           H  DH  W  +        + W  R P   ++L
Sbjct: 466 HPYDHLVWNSWMPSIRGAIQQWTCRQPEPLIEL 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,938
Number of Sequences: 438
Number of extensions: 5642
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)