Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30204
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 226 1e-59
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 226 1e-59
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 225 2e-59
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 225 2e-59
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 207 7e-54
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 207 7e-54
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 196 1e-50
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 100 2e-21
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 100 2e-21
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 99 3e-21
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 99 3e-21
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 99 3e-21
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 98 6e-21
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 95 4e-20
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 94 8e-20
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 93 1e-19
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 71 1e-12
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 71 1e-12
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 29 2.5
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 29 2.5
At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid t... 29 3.3
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 29 3.3
At2g31690.1 68415.m03868 lipase class 3 family protein similar t... 28 5.8
At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing pr... 28 7.7
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 226 bits (553), Expect = 1e-59
Identities = 101/139 (72%), Positives = 112/139 (80%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
HVPR F QLI+GKEDAANN+ARGHYTIGKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 424 RIRKLADQCTGLQGFLIFH 480
RIRKLAD CTGLQGFL+F+
Sbjct: 121 RIRKLADNCTGLQGFLVFN 139
Score = 70.9 bits (166), Expect = 8e-13
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +3
Query: 513 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 626
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSV 188
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 226 bits (553), Expect = 1e-59
Identities = 101/139 (72%), Positives = 112/139 (80%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
HVPR F QLI+GKEDAANN+ARGHYTIGKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 424 RIRKLADQCTGLQGFLIFH 480
RIRKLAD CTGLQGFL+F+
Sbjct: 121 RIRKLADNCTGLQGFLVFN 139
Score = 70.9 bits (166), Expect = 8e-13
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +3
Query: 513 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 626
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSV 188
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 225 bits (550), Expect = 2e-59
Identities = 101/139 (72%), Positives = 111/139 (79%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
HVPR F QLI+GKEDAANN+ARGHYTIGKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 424 RIRKLADQCTGLQGFLIFH 480
RIRKLAD CTGLQGFL+F+
Sbjct: 121 RIRKLADNCTGLQGFLVFN 139
Score = 70.9 bits (166), Expect = 8e-13
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +3
Query: 513 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 626
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSV 188
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 225 bits (550), Expect = 2e-59
Identities = 101/139 (72%), Positives = 111/139 (79%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
HVPR F QLI+GKEDAANN+ARGHYTIGKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 424 RIRKLADQCTGLQGFLIFH 480
RIRKLAD CTGLQGFL+F+
Sbjct: 121 RIRKLADNCTGLQGFLVFN 139
Score = 70.9 bits (166), Expect = 8e-13
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +3
Query: 513 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 626
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSV 188
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 207 bits (505), Expect = 7e-54
Identities = 92/139 (66%), Positives = 106/139 (76%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
HVPR F QLI+GKEDAANN+ARGHYT+GKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 424 RIRKLADQCTGLQGFLIFH 480
R+RKLAD CTGLQGFL+F+
Sbjct: 121 RVRKLADNCTGLQGFLVFN 139
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +3
Query: 513 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 626
SLL+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSV 188
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 207 bits (505), Expect = 7e-54
Identities = 92/139 (66%), Positives = 106/139 (76%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
HVPR F QLI+GKEDAANN+ARGHYT+GKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 424 RIRKLADQCTGLQGFLIFH 480
R+RKLAD CTGLQGFL+F+
Sbjct: 121 RVRKLADNCTGLQGFLVFN 139
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +3
Query: 513 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 626
SLL+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSV 188
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 196 bits (479), Expect = 1e-50
Identities = 86/139 (61%), Positives = 104/139 (74%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
HVPR F QLI+GKEDAANN+ARGHYT+G+EIVD L+
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120
Query: 424 RIRKLADQCTGLQGFLIFH 480
R+RKLAD CTGLQGFL+F+
Sbjct: 121 RLRKLADNCTGLQGFLVFN 139
Score = 70.9 bits (166), Expect = 8e-13
Identities = 32/38 (84%), Positives = 36/38 (94%)
Frame = +3
Query: 513 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 626
SLL+ERLSVD+GKKSKL F IYP+PQVSTAVVEPYNS+
Sbjct: 151 SLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSV 188
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 99.5 bits (237), Expect = 2e-21
Identities = 50/139 (35%), Positives = 69/139 (49%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGR 58
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
VPR F + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 FVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 424 RIRKLADQCTGLQGFLIFH 480
+RK A+ C LQGF + H
Sbjct: 119 VVRKEAENCDCLQGFQVCH 137
Score = 46.0 bits (104), Expect = 3e-05
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Frame = +3
Query: 255 AVFVDLEPTVVDEVRTGTYRQLFHPLTTYYW*GRCGQQLCPWSLHHWKGNRRFGFGQNPQ 434
AV +DLEP +D +R+G Y Q F P + G W+ H+
Sbjct: 63 AVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNN---WAKGHYTEGAELIDSVLDV 119
Query: 435 AR*PVYRSARIPDLPL---LRWRYRLWVTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 605
R + + L + +LL+ ++ +Y + L F+++P+P+VS V
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
Query: 606 VEPYNS 623
VEPYN+
Sbjct: 180 VEPYNA 185
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 99.5 bits (237), Expect = 2e-21
Identities = 50/139 (35%), Positives = 69/139 (49%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGR 58
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
VPR F + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 FVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 424 RIRKLADQCTGLQGFLIFH 480
+RK A+ C LQGF + H
Sbjct: 119 VVRKEAENCDCLQGFQVCH 137
Score = 46.0 bits (104), Expect = 3e-05
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Frame = +3
Query: 255 AVFVDLEPTVVDEVRTGTYRQLFHPLTTYYW*GRCGQQLCPWSLHHWKGNRRFGFGQNPQ 434
AV +DLEP +D +R+G Y Q F P + G W+ H+
Sbjct: 63 AVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNN---WAKGHYTEGAELIDSVLDV 119
Query: 435 AR*PVYRSARIPDLPL---LRWRYRLWVTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 605
R + + L + +LL+ ++ +Y + L F+++P+P+VS V
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
Query: 606 VEPYNS 623
VEPYN+
Sbjct: 180 VEPYNA 185
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 99.1 bits (236), Expect = 3e-21
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETG 234
MRE + + GQ G QIG+ WE+ C EHGI P G+ +G D + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGNSDLQLERVNVYYNEAS 55
Query: 235 AGKHVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDL 414
G++VPR F + G+ A NN+A+GHYT G E++D
Sbjct: 56 CGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
Query: 415 VLDRIRKLADQCTGLQGFLIFH 480
VLD +RK A+ C LQGF + H
Sbjct: 116 VLDVVRKEAENCDCLQGFQVCH 137
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = +3
Query: 255 AVFVDLEPTVVDEVRTGTYRQLFHPLTTYYW*GRCGQQLCPWSLHHWKGNRRFGFGQNPQ 434
A+ +DLEP +D VRTG Y Q+F P + G W+ H+
Sbjct: 63 AILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN---WAKGHYTEGAELIDAVLDV 119
Query: 435 AR*PVYRSARIPDLPL---LRWRYRLWVTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 605
R + + L + +LL+ ++ +Y + L F+++P+P+VS V
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
Query: 606 VEPYNS 623
VEPYN+
Sbjct: 180 VEPYNA 185
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 99.1 bits (236), Expect = 3e-21
Identities = 52/139 (37%), Positives = 69/139 (49%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRE + + GQ G QIG WE+ C EHGI GQ D + + N +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQL--ERINVYFNEASGGK 58
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
+VPR F + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 YVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 424 RIRKLADQCTGLQGFLIFH 480
+RK A+ C LQGF + H
Sbjct: 119 VVRKEAENCDCLQGFQVCH 137
Score = 44.8 bits (101), Expect = 6e-05
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = +3
Query: 255 AVFVDLEPTVVDEVRTGTYRQLFHPLTTYYW*GRCGQQLCPWSLHHWKGNRRFGFGQNPQ 434
AV +DLEP +D +R+G + Q+F P + G W+ H+
Sbjct: 63 AVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNN---WAKGHYTEGAELIDSVLDV 119
Query: 435 AR*PVYRSARIPDLPL---LRWRYRLWVTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 605
R + + L + +LL+ ++ +Y + + F+++P+P+VS V
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTV 179
Query: 606 VEPYNS 623
VEPYN+
Sbjct: 180 VEPYNA 185
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 99.1 bits (236), Expect = 3e-21
Identities = 50/139 (35%), Positives = 70/139 (50%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSA-DLQLERINVYYNEASGGR 59
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
+VPR F + G+ A NN+A+GHYT G E++D VLD
Sbjct: 60 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 119
Query: 424 RIRKLADQCTGLQGFLIFH 480
+RK A+ C LQGF + H
Sbjct: 120 VVRKEAENCDCLQGFQVCH 138
Score = 48.0 bits (109), Expect = 7e-06
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = +3
Query: 255 AVFVDLEPTVVDEVRTGTYRQLFHPLTTYYW*GRCGQQLCPWSLHHWKGNRRFGFGQNPQ 434
AV +DLEP +D +R+G Y Q+F P + G W+ H+
Sbjct: 64 AVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNN---WAKGHYTEGAELIDAVLDV 120
Query: 435 AR*PVYRSARIPDLPL---LRWRYRLWVTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 605
R + + L + +LL+ ++ +Y + L F+++P+P+VS V
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
Query: 606 VEPYNS 623
VEPYN+
Sbjct: 181 VEPYNA 186
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 97.9 bits (233), Expect = 6e-21
Identities = 50/139 (35%), Positives = 70/139 (50%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 59
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
+VPR F + G+ A NN+A+GHYT G E++D VLD
Sbjct: 60 YVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 119
Query: 424 RIRKLADQCTGLQGFLIFH 480
+RK A+ C LQGF + H
Sbjct: 120 VVRKEAENCDCLQGFQVCH 138
Score = 46.4 bits (105), Expect = 2e-05
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = +3
Query: 255 AVFVDLEPTVVDEVRTGTYRQLFHPLTTYYW*GRCGQQLCPWSLHHWKGNRRFGFGQNPQ 434
AV +DLEP +D +R+G + Q+F P + G W+ H+
Sbjct: 64 AVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNN---WAKGHYTEGAELIDAVLDV 120
Query: 435 AR*PVYRSARIPDLPL---LRWRYRLWVTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 605
R + + L + +LL+ ++ +Y + L F+++P+P+VS V
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
Query: 606 VEPYNS 623
VEPYN+
Sbjct: 181 VEPYNA 186
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/139 (35%), Positives = 70/139 (50%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRE + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQL--ERVNVYYNEASCGR 58
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
+VPR F + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 YVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 424 RIRKLADQCTGLQGFLIFH 480
+RK A+ C LQGF + H
Sbjct: 119 VVRKEAENCDCLQGFQVCH 137
Score = 47.6 bits (108), Expect = 9e-06
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = +3
Query: 255 AVFVDLEPTVVDEVRTGTYRQLFHPLTTYYW*GRCGQQLCPWSLHHWKGNRRFGFGQNPQ 434
AV +DLEP +D VR+G Y Q+F P + G W+ H+
Sbjct: 63 AVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNN---WAKGHYTEGAELIDSVLDV 119
Query: 435 AR*PVYRSARIPDLPL---LRWRYRLWVTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 605
R + + L + +LL+ ++ +Y + + F+++P+P+VS V
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTV 179
Query: 606 VEPYNS 623
VEPYN+
Sbjct: 180 VEPYNA 185
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 94.3 bits (224), Expect = 8e-20
Identities = 48/139 (34%), Positives = 68/139 (48%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRE + + GQ G QIG WE+ C EHGI G+ + + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQL--ERVNVYYNEASCGR 58
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
VPR F + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 424 RIRKLADQCTGLQGFLIFH 480
+RK A+ C LQGF + H
Sbjct: 119 VVRKEAENCDCLQGFQVCH 137
Score = 48.4 bits (110), Expect = 5e-06
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = +3
Query: 255 AVFVDLEPTVVDEVRTGTYRQLFHPLTTYYW*GRCGQQLCPWSLHHWKGNRRFGFGQNPQ 434
AV +DLEP +D VR+G Y Q+F P + G W+ H+
Sbjct: 63 AVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNN---WAKGHYTEGAELIDSVLDV 119
Query: 435 AR*PVYRSARIPDLPL---LRWRYRLWVTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 605
R + + L + +LL+ ++ +Y + L F+++P+P+VS V
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
Query: 606 VEPYNS 623
VEPYN+
Sbjct: 180 VEPYNA 185
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 93.5 bits (222), Expect = 1e-19
Identities = 50/139 (35%), Positives = 68/139 (48%)
Frame = +1
Query: 64 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 243
MRE + + GQ G QIG WE+ C EHGI GQ D + + + +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQL--ERIDVYFNEASGGK 58
Query: 244 HVPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKEDAANNYARGHYTIGKEIVDLVLD 423
+VPR F + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 YVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 424 RIRKLADQCTGLQGFLIFH 480
+RK A+ LQGF + H
Sbjct: 119 VVRKEAENSDCLQGFQVCH 137
Score = 46.8 bits (106), Expect = 2e-05
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Frame = +3
Query: 255 AVFVDLEPTVVDEVRTGTYRQLFHPLTTYYW*GRCGQQLCPWSLHHWKGNRRFGFGQNPQ 434
AV +DLEP +D +R+G + Q+F P + G W+ H+
Sbjct: 63 AVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNN---WAKGHYTEGAELIDSVLDV 119
Query: 435 AR*PVYRSARIPDLPL---LRWRYRLWVTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 605
R S + + L + +LL+ ++ +Y + + F+++P+P+VS V
Sbjct: 120 VRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTV 179
Query: 606 VEPYNS 623
VEPYN+
Sbjct: 180 VEPYNA 185
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 70.5 bits (165), Expect = 1e-12
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Frame = +1
Query: 67 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 246
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 247 VPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKE--DAANNYARGHYTIGKEIVDLVL 420
+PR + + H + A NN+A G++ GK + + ++
Sbjct: 61 IPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEIM 119
Query: 421 DRIRKLADQCTGLQGFLIFH 480
D I + AD L+GF++ H
Sbjct: 120 DMIDREADGSDSLEGFVLCH 139
Score = 32.3 bits (70), Expect = 0.36
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Frame = +3
Query: 255 AVFVDLEPTVVDEVRTGTYRQLFHPLTTYYW*GRCGQQLCPWSLHHWKGNRRFGFGQNPQ 434
A+ +DLEP V++ ++ G YR L++ + G ++W G G +
Sbjct: 64 ALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAG------NNWASGYHQGKGVEEE 117
Query: 435 AR*PVYRSARIPD-------LPLLRWRYRLWVTSLLMERLSVDYGKKSKLEFAIYP-APQ 590
+ R A D + + S L+E L+ Y KK ++++P +
Sbjct: 118 IMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQME 177
Query: 591 VSTAVVEPYNSI 626
S VV+PYNS+
Sbjct: 178 TSDVVVQPYNSL 189
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 70.5 bits (165), Expect = 1e-12
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Frame = +1
Query: 67 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 246
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 247 VPRXXXXXXXXXXXXXXXXAHTDSCFIHSQLITGKE--DAANNYARGHYTIGKEIVDLVL 420
+PR + + H + A NN+A G++ GK + + ++
Sbjct: 61 IPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEIM 119
Query: 421 DRIRKLADQCTGLQGFLIFH 480
D I + AD L+GF++ H
Sbjct: 120 DMIDREADGSDSLEGFVLCH 139
Score = 32.3 bits (70), Expect = 0.36
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Frame = +3
Query: 255 AVFVDLEPTVVDEVRTGTYRQLFHPLTTYYW*GRCGQQLCPWSLHHWKGNRRFGFGQNPQ 434
A+ +DLEP V++ ++ G YR L++ + G ++W G G +
Sbjct: 64 ALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAG------NNWASGYHQGKGVEEE 117
Query: 435 AR*PVYRSARIPD-------LPLLRWRYRLWVTSLLMERLSVDYGKKSKLEFAIYP-APQ 590
+ R A D + + S L+E L+ Y KK ++++P +
Sbjct: 118 IMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQME 177
Query: 591 VSTAVVEPYNSI 626
S VV+PYNS+
Sbjct: 178 TSDVVVQPYNSL 189
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +3
Query: 489 WRYRLWVTSLLMERLSVDYGKKSKLE---FAIYPAPQVSTAVVEPYNSIPHHPTQP 647
W R V S L D G L+ F + P VS VVEP +S+ HP P
Sbjct: 1667 WHLRALVLSCLKNCFLHDTGSLKFLDTNNFQVLLKPIVSQLVVEPPSSLKEHPHVP 1722
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 501 AGTSTEGVEDQESLQTGTLVSELADSVQNQIYD 403
+G TEGVED S LV D ++ QI D
Sbjct: 609 SGLMTEGVEDHTSSDINLLVDRSFDKIEKQIRD 641
>At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein - Hordeum vulgare, EMBL:AF109195;
contains Pfam protease inhibitor/seed storage/LTP family
domain PF00234
Length = 158
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -2
Query: 233 PVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPI 108
PVS L +SPP +W SGW P +PI
Sbjct: 101 PVSACDSLPPASPPTANGQAPVWGSGWAPAPSPSKGNSLIPI 142
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 537 VDYGKKSKLEFAIYPAPQVSTAVVEPYNSIPHH 635
+D+ + F P VS A V+PYNS H
Sbjct: 285 IDFSSARGISFKFESNPSVSPACVKPYNSFDSH 317
>At2g31690.1 68415.m03868 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile PF01764: Lipase
Length = 484
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 287 NNSRFKIDEDSRGTCLPAPVSLKKVLKESSPPPM 186
N R K S + L APV L + SSPPP+
Sbjct: 38 NPKRLKTANSSSSSSLLAPVILNSPVASSSPPPI 71
>At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing
protein similar to testis specific methyl-CpG binding
protein MBD2 [Homo sapiens] GI:3800801; contains Pfam
profile PF01429: Methyl-CpG binding domain
Length = 225
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 506 PEPVPPPKEWKIRNPCRPVHWS 441
P P PPP ++ +NP V WS
Sbjct: 161 PPPPPPPLDFDFKNPPDKVSWS 182
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,861,475
Number of Sequences: 28952
Number of extensions: 399467
Number of successful extensions: 1279
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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