Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30203
(707 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 25 0.60
AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless pr... 25 0.60
AY695258-1|AAW21975.1| 232|Tribolium castaneum muscle segment h... 23 2.4
AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 23 3.2
AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein p... 23 3.2
AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein p... 23 3.2
EF592536-1|ABQ95982.1| 598|Tribolium castaneum beta-N-acetylglu... 22 5.6
AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase ... 22 5.6
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 22 5.6
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 22 5.6
U09586-2|AAC47271.1| 712|Tribolium castaneum protease, reverse ... 21 9.8
AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 21 9.8
AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. 21 9.8
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 25.0 bits (52), Expect = 0.60
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 355 QADHPRQVQDHHQVAGFQPAGRQG 426
Q HP+ Q HHQ G+QG
Sbjct: 172 QEQHPQHHQPHHQQQHMMYGGQQG 195
>AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless
protein.
Length = 325
Score = 25.0 bits (52), Expect = 0.60
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 355 QADHPRQVQDHHQVAGFQPAGRQG 426
Q HP+ Q HHQ G+QG
Sbjct: 174 QEQHPQHHQPHHQQQHMMYGGQQG 197
>AY695258-1|AAW21975.1| 232|Tribolium castaneum muscle segment
homeodomain protein protein.
Length = 232
Score = 23.0 bits (47), Expect = 2.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 248 QAKETIQAKNAFESYCFSMKSTMEDEKLKEKISDSD 355
+ K I++K +F S+ S EDE+++ ++SD D
Sbjct: 3 ETKTEIKSKISFSVE--SLLSKKEDEEVEHRLSDRD 36
>AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain
transcription factor Labialprotein.
Length = 353
Score = 22.6 bits (46), Expect = 3.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 101 CQRYPHRFRYREVHQQGE 154
C Y H RY+E QG+
Sbjct: 156 CMEYQHLHRYKEEALQGD 173
>AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein
protein.
Length = 210
Score = 22.6 bits (46), Expect = 3.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 101 CQRYPHRFRYREVHQQGE 154
C Y H RY+E QG+
Sbjct: 156 CMEYQHLHRYKEEALQGD 173
>AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein
protein.
Length = 253
Score = 22.6 bits (46), Expect = 3.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 101 CQRYPHRFRYREVHQQGE 154
C Y H RY+E QG+
Sbjct: 156 CMEYQHLHRYKEEALQGD 173
>EF592536-1|ABQ95982.1| 598|Tribolium castaneum
beta-N-acetylglucosaminidase NAG1 protein.
Length = 598
Score = 21.8 bits (44), Expect = 5.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 554 FFCPPWAGCCLAPPIECG 607
F PW+ C+ PP CG
Sbjct: 316 FNAKPWSNYCVEPP--CG 331
>AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase
protein.
Length = 677
Score = 21.8 bits (44), Expect = 5.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 494 LSLSVPVVCSGFPGLC 541
++LSVPV+ SG +C
Sbjct: 166 INLSVPVLLSGLIAMC 181
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 21.8 bits (44), Expect = 5.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 494 LSLSVPVVCSGFPGLC 541
++LSVPV+ SG +C
Sbjct: 399 INLSVPVLLSGLIAMC 414
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 21.8 bits (44), Expect = 5.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 494 LSLSVPVVCSGFPGLC 541
++LSVPV+ SG +C
Sbjct: 399 INLSVPVLLSGLIAMC 414
>U09586-2|AAC47271.1| 712|Tribolium castaneum protease, reverse
transcriptase andRNase H protein.
Length = 712
Score = 21.0 bits (42), Expect = 9.8
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 352 RVRDLFLELLIL 317
RV+DLFLE ++L
Sbjct: 581 RVKDLFLEAVLL 592
>AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein.
Length = 790
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -1
Query: 434 HTPPCRPAGWNP 399
H PP P G NP
Sbjct: 743 HQPPRNPVGTNP 754
>AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein.
Length = 682
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -1
Query: 434 HTPPCRPAGWNP 399
H PP P G NP
Sbjct: 635 HQPPRNPVGTNP 646
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,479
Number of Sequences: 336
Number of extensions: 3652
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -