Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30202
         (830 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004D87F9 Cluster: UPI00004D87F9 related cluster; n...    38   0.23 
UniRef50_Q8JKV9 Cluster: Histone h3, h4; n=2; root|Rep: Histone ...    33   6.6  

>UniRef50_UPI00004D87F9 Cluster: UPI00004D87F9 related cluster; n=3;
           Xenopus tropicalis|Rep: UPI00004D87F9 UniRef100 entry -
           Xenopus tropicalis
          Length = 547

 Score = 38.3 bits (85), Expect = 0.23
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 670 IGYIILYFLLFKYWITYFFLQLFKFMVFYYIVISVSDS 557
           + Y+IL+ LL  +WI +F   LF++ +FY + +  S S
Sbjct: 94  LSYLILHLLLHLFWILHFLPHLFRYFIFYLLSLDTSFS 131


>UniRef50_Q8JKV9 Cluster: Histone h3, h4; n=2; root|Rep: Histone h3,
           h4 - Heliothis zea virus 1
          Length = 1111

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 19/40 (47%), Positives = 20/40 (50%)
 Frame = -1

Query: 815 KPKGPGPKSIPNGKVPTNVLNMPVIDILKVGTTPKPPKYG 696
           KPK P PKS P    PTN  N  V  I K  TTP+    G
Sbjct: 625 KPK-PNPKSKPPTNTPTNTPNQNVTIIFKQPTTPRVDSNG 663


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 759,689,442
Number of Sequences: 1657284
Number of extensions: 15115632
Number of successful extensions: 33054
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32919
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72143915536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)