Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30202
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41129| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_19871| Best HMM Match : dDENN (HMM E-Value=0.15)                    29   6.1  
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)              28   8.1  
SB_27611| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_41129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = -1

Query: 812 PKGPGPKSIPNGKVPTNVLNMPVIDILKVGTTPKPP 705
           P  PGP    +G VPT V++  V DI    TTPKPP
Sbjct: 36  PSSPGP----DGDVPTVVVDKGVQDIT---TTPKPP 64


>SB_19871| Best HMM Match : dDENN (HMM E-Value=0.15)
          Length = 309

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 802 PGPNPYQTERSPQTC 758
           P PNPYQT   P+TC
Sbjct: 214 PRPNPYQTAARPRTC 228


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 716 PKPPKYGPHYRFSLKNWL 663
           P PP YGP  ++S  +WL
Sbjct: 171 PSPPGYGPELKYSKHSWL 188


>SB_27611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -2

Query: 712 NPLNMDPIIVLV*KIGYIILYFLLFKYWITYFFLQLFKFMVFYYIVISVSD 560
           N +N+  I+V++  I  ++ +  L  +W++YF     K      +VI+V +
Sbjct: 10  NIVNVIIIVVVIILIVVVLFFVALVTFWVSYFLGSFLKAETDENVVINVEN 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,132,392
Number of Sequences: 59808
Number of extensions: 461948
Number of successful extensions: 962
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)