Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30202
         (830 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U43195-1|AAB02814.1| 1354|Homo sapiens Rho-associated, coiled-co...    31   5.1  
BC113114-1|AAI13115.1| 1354|Homo sapiens Rho-associated, coiled-...    31   5.1  
BC041849-1|AAH41849.1|  118|Homo sapiens ROCK1 protein protein.        31   5.1  

>U43195-1|AAB02814.1| 1354|Homo sapiens Rho-associated, coiled-coil
            containing protein kinase p160ROCK protein.
          Length = 1354

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 259  KSQHDVTPSQGMYLLNISEESQSHWYGHLISNV 161
            K  +DVT ++ M LL  S++ Q  W  HL+  +
Sbjct: 1284 KVSYDVTSARDMLLLACSQDEQKKWVTHLVKKI 1316


>BC113114-1|AAI13115.1| 1354|Homo sapiens Rho-associated, coiled-coil
            containing protein kinase 1 protein.
          Length = 1354

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 259  KSQHDVTPSQGMYLLNISEESQSHWYGHLISNV 161
            K  +DVT ++ M LL  S++ Q  W  HL+  +
Sbjct: 1284 KVSYDVTSARDMLLLACSQDEQKKWVTHLVKKI 1316


>BC041849-1|AAH41849.1|  118|Homo sapiens ROCK1 protein protein.
          Length = 118

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 259 KSQHDVTPSQGMYLLNISEESQSHWYGHLISNV 161
           K  +DVT ++ M LL  S++ Q  W  HL+  +
Sbjct: 73  KVSYDVTSARDMLLLACSQDEQKKWVTHLVKKI 105


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,368,746
Number of Sequences: 237096
Number of extensions: 2244577
Number of successful extensions: 3778
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3778
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)