Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30202
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132872-2|CAB60761.2|  119|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81099-3|CAB03186.3|  490|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    29   5.4  

>AL132872-2|CAB60761.2|  119|Caenorhabditis elegans Hypothetical
           protein Y116F11A.3 protein.
          Length = 119

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 201 SSEMFSRYIPCDGVTSCWLF*ICIEYLNYN*MISIFYDCFLSTSFPI 341
           ++ + S+Y  C      W    C+ +L+Y    S FY  + + +FPI
Sbjct: 51  TNRLVSKYNFCPNYAPGWQLDSCVAFLDYT--FSFFYRIYYAINFPI 95


>Z81099-3|CAB03186.3|  490|Caenorhabditis elegans Hypothetical
           protein K08F9.1 protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 715 GVVPTFRMSITGILSTFVGTFPFGMDL 795
           G  P+FRM I  ++++  G+F +G +L
Sbjct: 2   GETPSFRMLIVAVITSMAGSFHYGYNL 28


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 667 GYIILYFLLFKYWITYFFLQLFKFMVFYYIVISV 566
           G I +YF+ F ++ T FFL +    ++  I+IS+
Sbjct: 188 GGIDVYFIYFAFYYTIFFLPVLASFLYIPIMISI 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,840
Number of Sequences: 27780
Number of extensions: 376506
Number of successful extensions: 812
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)