Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30201
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    26   0.36 
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    23   1.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.7  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 385 VDSYGDRKTWGSNGSSEKRHTWSLYPVKVGNQQLFLHREPGDRAGTEAGRERGL 546
           VD YG    W ++  +   +T+ + PV V  +++ L RE     G E G+  G+
Sbjct: 142 VDPYGLVAQWATDALNPSVYTYEVSPVFVLMEEVVL-REMRAIVGFEGGKGDGI 194


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +1

Query: 280 SHHVSWRLISLWENNNVIFKILN------TEYEMYLKLDVNVDSY 396
           S  ++WR+   W   NV+ KI+       T    Y+ + +++D Y
Sbjct: 101 STDIAWRITVAWYAGNVLCKIIRFLQAVVTYSSTYVLVALSIDRY 145


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 598 RVLRLHNSSRGQFTPFLDPRRTGRLTFCNH 687
           R + +  +S G F P ++P+R  R  +  H
Sbjct: 215 RKVHVAGASNGTFAPGMEPKRQ-RTAYTRH 243


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 598 RVLRLHNSSRGQFTPFLDPRRTGRLTFCNH 687
           R + +  +S G F P ++P+R  R  +  H
Sbjct: 215 RKVHVAGASNGTFAPGMEPKRQ-RTAYTRH 243


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 502 VLDEGTAVDFPPLP 461
           VL  GT  D PP+P
Sbjct: 684 VLQVGTHADLPPVP 697


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 598 RVLRLHNSSRGQFTPFLDPRRTGRLTFCNH 687
           R + +  +S G F P ++P+R  R  +  H
Sbjct: 215 RKVHVAGASNGTFAPGMEPKRQ-RTAYTRH 243


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,202
Number of Sequences: 336
Number of extensions: 3717
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)