Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30201
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   2.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         27   3.6  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    26   4.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   6.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   6.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.3  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 52   WLVSQGIKNTMSFAYKLWHEGHKDIVEDYFPSEFQ 156
            W    GI N + +    WH   K  + D FP++FQ
Sbjct: 952  WGFDSGIPNRLIYKNCSWH---KTFISDVFPTKFQ 983


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -1

Query: 595 VVGNCPVAPQNKAVPV*VHVRVQLQSLPGLPVLDEGTAVDFPPL 464
           VV   P  PQ  AVPV V   + +   P  PV  E  +V  PP+
Sbjct: 552 VVPEAPSVPQRPAVPV-VPEALSVPQPPVAPVAPEVPSVPQPPV 594


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 173 VGRVMSWNSLGK*SSTMSLWPSCHSLYANDMVFLM 69
           +G+ +S+  +GK    +SL P  HS+ +   + LM
Sbjct: 376 IGKALSYGIIGKTGQDLSLTPLNHSIESRPFLVLM 410


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 382 NVDSYGDRKTWGSNGSS 432
           N  SYG   T+GSNGSS
Sbjct: 72  NYGSYGASNTYGSNGSS 88


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/62 (25%), Positives = 24/62 (38%)
 Frame = +2

Query: 116  TRTSSKITSRANSNSSLDQQIIKLIGKHYNQALKLDANVGEYNDRLTGETEKTTPATMSA 295
            T  +++      +N +L    + L   ++N  L LD N    ND     T     A  S 
Sbjct: 1199 TMIAAETFDELENNLALAIDRLPLSRNYFNAGLTLDGNSSSANDNTQELTNVVNVALTST 1258

Query: 296  GD 301
            GD
Sbjct: 1259 GD 1260


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 111 GPQGHRRRLLPERIPTHHSTNR*LSSSANIT 203
           GP+ + + LLPE IPT H+ +   + +A+++
Sbjct: 586 GPR-NEKELLPEGIPTSHNNSETQAQTADVS 615


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +2

Query: 107 TRATRTSSKITSRANSNSSLDQQIIKLIGKHYNQALKLDANVGEYNDRLTGETEKTTPAT 286
           T AT TSS ++S A SNS+       L     N      A     +  ++  T  T+  +
Sbjct: 204 TSATATSSSLSSTAASNSATSS---SLASSSLNSTTSATATSSSISSTVSSSTPLTSSNS 260

Query: 287 MSAGDSS 307
            +A  S+
Sbjct: 261 TTAATSA 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,704
Number of Sequences: 5004
Number of extensions: 63738
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)