Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30201
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0188 + 32212297-32212746 31 0.70
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 29 2.8
01_06_0771 - 31852796-31853092,31853407-31853793,31854001-318549... 29 3.8
01_01_0685 + 5257336-5257653,5259021-5259073,5259144-5259240,525... 29 3.8
07_03_1588 + 27942415-27942434,27942561-27942629,27942743-27943550 28 6.6
10_08_0397 + 17571492-17571664,17571875-17572034,17572140-175722... 28 8.7
05_07_0120 + 27827059-27827814 28 8.7
02_05_0184 + 26543156-26544019 28 8.7
>03_06_0188 + 32212297-32212746
Length = 149
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1
Query: 607 VVPGVVGNCPVAPQNKAVPV*VHVRVQLQSLPGLPVLDEGTAVDFPP 467
V+PGV G V P VPV V V + +PG+P++ T + PP
Sbjct: 63 VIPGVPGVPVVGPGIPFVPVIPGVPVIVPIIPGVPMIAGMTTLPVPP 109
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 29.5 bits (63), Expect = 2.8
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = +1
Query: 202 QSSSQTGC*RWRVQ--RPPNWGDGKDYTSHHVSW-RLISLWENNNVIFKILNTEYEMYLK 372
QSS+Q W+ R N G + + SW R ENNN + N +E
Sbjct: 1515 QSSTQNDGNSWKENKGRGSNGGSWEKDNAQKGSWGRGNDEAENNN---DVQNKSWET--- 1568
Query: 373 LDVNVDSYGD-RKTWGSNGSSEKRHTWSLYPVKVGN 477
V D++ K+WG+ +S + WS PV GN
Sbjct: 1569 --VAADAHASTEKSWGNVTASPSDNAWSAAPVSQGN 1602
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 388 DSYGDRKTWGSNGSSEKRHTWSLYPVKVGNQ 480
DS D+++WG+ +S W+ PV GN+
Sbjct: 1725 DSVKDKESWGNVPASPSDSAWNAAPVSQGNE 1755
>01_06_0771 -
31852796-31853092,31853407-31853793,31854001-31854999,
31855084-31855238,31855694-31855784,31855866-31855969,
31856052-31856274,31856415-31856499,31856741-31857132,
31857963-31858130
Length = 966
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 165 SDELEFAREVIFDDVLVALVPQLVRERHGVLDALRDEPRDDVAT 34
+DE E F++ L LV +L + H V DAL+++ D V T
Sbjct: 127 ADENSATTESNFEETLKRLVGELKKSPHEVFDALKNQTIDLVLT 170
>01_01_0685 +
5257336-5257653,5259021-5259073,5259144-5259240,
5259383-5259481,5259573-5259731
Length = 241
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 98 SCGTRATRTSSKITSRANSNSSLDQQIIKLIGKHYNQALKLDANVGEY 241
SC + S+ + RANS L +Q+ KL +H + LK DA++ Y
Sbjct: 131 SCRIKKALLSNPCSRRANSYDRLCEQVHKLEAEH--KRLKKDADIYNY 176
>07_03_1588 + 27942415-27942434,27942561-27942629,27942743-27943550
Length = 298
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 165 SDELEFAREVIFDDVLVALVPQLVRERHGVLDALRDE---PRDDVATDVGAL 19
+D +AR + D+ VA L RHG LD + + P D T VGAL
Sbjct: 79 ADAASYARCDVTDEAQVAAAVDLAVARHGRLDVVFNNAGIPGDLTPTPVGAL 130
>10_08_0397 +
17571492-17571664,17571875-17572034,17572140-17572222,
17572333-17572468,17572515-17572610,17573105-17573218,
17573322-17573405,17573493-17573648,17573744-17573818,
17574318-17574424,17574508-17574688,17574832-17575020,
17575397-17575477,17575621-17575755,17576007-17576329,
17576503-17576608,17576734-17576883,17577034-17577180
Length = 831
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 490 GTAVDFPPLPGIKTRC 443
GTAVD+ P+PG+K C
Sbjct: 157 GTAVDWVPMPGMKVDC 172
>05_07_0120 + 27827059-27827814
Length = 251
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 480 TAVPSSRTGRPGRD*SWTRTWTHTGTALFWGATGQLPTTPGTTAS*FQPWSVYTL 644
TA RT G D +T T T T +TG + TT GT QP +VY++
Sbjct: 127 TASNPVRTQASGGDGPYTLNITATSTNQVNVSTGVVDTTLGTALRADQPLAVYSV 181
>02_05_0184 + 26543156-26544019
Length = 287
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -2
Query: 666 TSPSGIQKGCKLTTAGIMKP*YPGLSATVPLLPKTRPSPYESTFASSFSPCPVSRFSMKE 487
TSPS IQ L A S+ V T EST +++ SPC + S++E
Sbjct: 167 TSPSDIQAAAALAAAAAATDQCESSSSAVAAATATDAEAAESTSSAAASPCAATS-SVEE 225
Query: 486 QLL 478
L
Sbjct: 226 NAL 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,474,842
Number of Sequences: 37544
Number of extensions: 453302
Number of successful extensions: 1530
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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