Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30201
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0)                  29   2.9  
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)                28   6.7  
SB_1010| Best HMM Match : Spt4 (HMM E-Value=6.9)                       28   6.7  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          28   8.9  
SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0)
          Length = 408

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 502 PGDRAGTEAGRERGLIRGRPCFGEQRDSCRQPRVLRLHN 618
           PG   GT   R  GL+  + CF + ++ C+    +++ N
Sbjct: 355 PGWMVGTHPVRRYGLVTRKVCFHQHKNCCKWSNYIKVRN 393


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 188 IGKHYNQALKLDANVGEYNDRLTGETEKTTPATMSAGDSSLF 313
           IG+H+  A  L  N G +  RL   +E    A  +AG+  +F
Sbjct: 539 IGRHHGAAEVLQLNSGGHESRLLLASEARVMARQAAGEDGMF 580


>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
          Length = 333

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 247 PPNWGDGKDYTSHHVSWRLISLWENNNV 330
           PP W  GKD+ SH   + L+ L E  N+
Sbjct: 207 PPEWLSGKDF-SHEHDYALLKLTEPTNI 233


>SB_1010| Best HMM Match : Spt4 (HMM E-Value=6.9)
          Length = 99

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 370 KLDVNVDSYGDRKTWGSNGSSEKRHTWSLYPVKVGNQQ 483
           K+ +N  S+   +TW  N    KR    +YP++ G +Q
Sbjct: 31  KVKLNPGSWACEETWQKNSKDIKRAIKGIYPMEEGPKQ 68


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +2

Query: 83  CRSRTSCGTRATRTSSKITSRANSNSSLDQQIIKLIGKHYNQALKLDAN----VGEYNDR 250
           C++      R   TSSK  S   S   +D ++I+++ K Y +  K   N    +GE+ D 
Sbjct: 321 CKNIMKAAMRQGLTSSKTISEEISPRDMDSRLIEILKKRYLRVGKRFGNRFTSLGEFQDF 380

Query: 251 L 253
           L
Sbjct: 381 L 381


>SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -2

Query: 594 LSATVPLLPKTRPS----PYESTFASSFSPCPVSRFSMKEQLLISH 469
           +SA +P +P+TRP+    P   T     SP P  R    E++++SH
Sbjct: 337 ISAPLPPIPRTRPAMTPPPISPTTGPPKSPAPTRR----EEMMLSH 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,298,696
Number of Sequences: 59808
Number of extensions: 517696
Number of successful extensions: 1461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)