Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30201
         (727 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK000948-1|BAA91441.1|  785|Homo sapiens protein ( Homo sapiens ...    32   1.8  
AF264784-1|AAG21134.1| 1281|Homo sapiens zinc finger protein GC7...    32   1.8  
AF183810-1|AAF23614.1| 1281|Homo sapiens zinc finger transcripti...    32   1.8  
AK129942-1|BAC85254.1|  198|Homo sapiens protein ( Homo sapiens ...    28   2.1  
AK128829-1|BAC87629.1|  385|Homo sapiens protein ( Homo sapiens ...    31   4.2  
AK125874-1|BAC86330.1|  243|Homo sapiens protein ( Homo sapiens ...    31   5.6  

>AK000948-1|BAA91441.1|  785|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10086 fis, clone HEMBA1002177, weakly similar to
           TRANSCRIPTION FACTOR GATA-4. ).
          Length = 785

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 538 RGLIRGRPCFGEQRDSCRQPRVLRLHNSSRGQFTPFLDPRRTGRLTFCNHCLQLKPSIQR 717
           +G ++G P  GE+  +  Q       N S+ +    L  RR G   FC +CL  K S+ R
Sbjct: 356 KGFLQGAPAGGEKSGALPQQYPASGENKSKDESQSLLR-RRRGSGVFCANCLTTKTSLWR 414


>AF264784-1|AAG21134.1| 1281|Homo sapiens zinc finger protein GC79
            protein.
          Length = 1281

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 538  RGLIRGRPCFGEQRDSCRQPRVLRLHNSSRGQFTPFLDPRRTGRLTFCNHCLQLKPSIQR 717
            +G ++G P  GE+  +  Q       N S+ +    L  RR G   FC +CL  K S+ R
Sbjct: 850  KGFLQGAPAGGEKSGALPQQYPASGENKSKDESQSLLR-RRRGSGVFCANCLTTKTSLWR 908


>AF183810-1|AAF23614.1| 1281|Homo sapiens zinc finger transcription
            factor TRPS1 protein.
          Length = 1281

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 538  RGLIRGRPCFGEQRDSCRQPRVLRLHNSSRGQFTPFLDPRRTGRLTFCNHCLQLKPSIQR 717
            +G ++G P  GE+  +  Q       N S+ +    L  RR G   FC +CL  K S+ R
Sbjct: 850  KGFLQGAPAGGEKSGALPQQYPASGENKSKDESQSLLR-RRRGSGVFCANCLTTKTSLWR 908


>AK129942-1|BAC85254.1|  198|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26432 fis, clone KDN01418. ).
          Length = 198

 Score = 28.3 bits (60), Expect(2) = 2.1
 Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +3

Query: 456 IPGKGGKSTAVPSSRTG-RPG 515
           +P +GG++ A P+SRTG RPG
Sbjct: 122 LPRRGGRAEAPPTSRTGRRPG 142



 Score = 22.6 bits (46), Expect(2) = 2.1
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +3

Query: 492 SSRTGRPGRD 521
           +S+TGRPGRD
Sbjct: 174 TSQTGRPGRD 183


>AK128829-1|BAC87629.1|  385|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46309 fis, clone TESTI4039744. ).
          Length = 385

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 459 PGKGGKSTAVPSSRTGRPGR 518
           P +GG++ A+P+S+ GRPGR
Sbjct: 50  PRRGGRAEALPTSQMGRPGR 69


>AK125874-1|BAC86330.1|  243|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43886 fis, clone TESTI4009283. ).
          Length = 243

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = +3

Query: 468 GGKSTAVPSSRTGRPGR 518
           GG++ A+P+S+TGRPGR
Sbjct: 91  GGRAEALPTSQTGRPGR 107


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,599,273
Number of Sequences: 237096
Number of extensions: 2566654
Number of successful extensions: 6729
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6725
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)