Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30201
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29097-5|AAA68413.1|  222|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic acety...    29   2.6  
U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic acety...    29   2.6  
U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine r...    28   7.8  

>U29097-5|AAA68413.1|  222|Caenorhabditis elegans Hypothetical
           protein F18C5.5 protein.
          Length = 222

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 580 PVAPQNKAVPV*VHVRVQLQSLPGLPVLDEGTAVDFPPLPGIKT 449
           P+ P  + +PV V V +  + LP LP L   T   F P+PG+ T
Sbjct: 92  PLLPLPQFIPVPVPV-LSAEGLPTLPTLAPHTFPTFTPIPGMPT 134


>Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical
           protein K03B8.9 protein.
          Length = 564

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 593 NPGYYGFIIPAVVSLHPFWIPD 658
           NP  YG I   ++  H  WIPD
Sbjct: 117 NPNEYGMINSTIIPFHHLWIPD 138


>U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit precursor protein.
          Length = 564

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 593 NPGYYGFIIPAVVSLHPFWIPD 658
           NP  YG I   ++  H  WIPD
Sbjct: 117 NPNEYGMINSTIIPFHHLWIPD 138


>U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 564

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 593 NPGYYGFIIPAVVSLHPFWIPD 658
           NP  YG I   ++  H  WIPD
Sbjct: 117 NPNEYGMINSTIIPFHHLWIPD 138


>U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine
           receptor protein 5 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 593 NPGYYGFIIPAVVSLHPFWIPD 658
           NP  YG I   +V  H  WIPD
Sbjct: 170 NPVDYGMINRTIVPYHQIWIPD 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,796,637
Number of Sequences: 27780
Number of extensions: 373264
Number of successful extensions: 1172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)